Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001690.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value seq64944 762 0.0 >seq64944 Length=5375 Score = 762 bits (844), Expect = 0.0 Identities = 442/455 (97%), Gaps = 0/455 (0%) Strand=Plus/Minus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 845 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 786 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 785 CAACCTGGGTGGATTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 726 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 725 TGTTTTCGTGAACTTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 666 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 |||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 665 CGATCACGCCATCTTTCATCGGACGAATGGCGGCAATATTGCCGGGTGTACGGCCGAGCA 606 Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGG 300 |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| | Sbjct 605 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGGTTACCGTGCGTCCGAATAG 546 Query 301 CCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 CCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAAATAAGGGTGTTGG 486 Query 361 CAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACATGG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 CAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACATGG 426 Query 421 GGAAAGGACCCTAAGCAACGCGTGGGTAAAAAAGT 455 | || |||||||| ||||||||||||||||||||| Sbjct 425 GAAAGGGACCCTAGGCAACGCGTGGGTAAAAAAGT 391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1351806804864