Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001719.1 Length=232 Score E Sequences producing significant alignments: (Bits) Value seq95780 100 4e-19 >seq95780 Length=17828 Score = 100 bits (110), Expect = 4e-19 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 26 CAACGGGCAACCTGAGCAACCAAGGCGGAGAACTGCGCAGTGCCACTCAGTTGGGGATGA 85 |||| ||||| |||||||| || | || |||| || | |||||| |||||||| Sbjct 3445 CAACTGGCAAGCTGAGCAATCAGGCAGGCCAACTAAATAGCGGCACTCATTTGGGGATCT 3504 Query 86 CCGTTACTGCACTGGACAACAGCCGTAACGGGCATGTCGCAAGCCAAGCCGATGCAAGCC 145 | || | || ||||||||||||||| ||| | | | | ||||| |||||| | || Sbjct 3505 CGGTAATCGCGCTGGACAACAGCCGTGGCGGACGTATTTCCGGCCAAACCGATGTGAACC 3564 Query 146 TGGATATGCAAGGTGGTTACCTAAACAATAACAGTGGTTTGATCAACGCGCCGGGGCAAT 205 | || ||||||| || | || ||||| | ||| ||||| | |||||| ||||| | Sbjct 3565 TCGACCTGCAAGGCGGCCATCTCAACAACCGTAATGGCTTGATAAGCGCGCCTGGGCAGT 3624 Query 206 TGCTGCTCAAGCAACTGGGCAGCGT 230 | |||| || ||||| || | ||| Sbjct 3625 TATTGCTTAAACAACTCGGTACCGT 3649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 642374542044