Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001720.1 Length=447 Score E Sequences producing significant alignments: (Bits) Value seq90772 596 4e-168 >seq90772 Length=15112 Score = 596 bits (660), Expect = 4e-168 Identities = 380/413 (92%), Gaps = 0/413 (0%) Strand=Plus/Plus Query 35 CGCTATCTCAACCAGCAGGGGCGCGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATT 94 ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 3570 CGCTACCTCAACCAGCAGGGGCGGGATGTGGTGAACAGCAATGCCAAGGCCCACAGCATT 3629 Query 95 CGCGATTGGGGCCAGGGGTTCGAGTTCAACTTCAAGTCCGGTTACACCGCAGGGCCGGTG 154 ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||| Sbjct 3630 CGCGATTGGGGCCAGGGGTTCGAGTTCAACTTCAAGTCCGGCTACACCGAAGGCCCAGTG 3689 Query 155 GGTTTTGGCCTCGACTTGCAGGCGTTCTACGGGTTGAAGCTGGATTCCGGAGGCGACCTC 214 ||||||||||| ||| |||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 3690 GGTTTTGGCCTGGACCTGCAGGCGTTCTACGGGTTGAAACTGGACTCCGGCGGCGACCTC 3749 Query 215 AACGACAAGGACCACCAGAGCCGTTACCCCGGCAGCATGTTCCCGCTGGACAACGGCAAA 274 ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 3750 AACGACAAGGATCACCAGGGCCGCTACCCCGGCAGCATGTTCCCGCTGGACAACGGCAAA 3809 Query 275 TCCGCCGACCAGTTCGGCGTGCTCAGCCCGACGTTCAAGATGCGCTTCGCCAAAGATGAG 334 |||||||||||||||| ||| | ||||||||||||||| |||| || ||||| |||||| Sbjct 3810 TCCGCCGACCAGTTCGATGTGTTGAGCCCGACGTTCAAGGTGCGTTTTGCCAAGGATGAG 3869 Query 335 CTGCGTGTGGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACACCGACGGCCGCCTG 394 ||||| || |||||||| ||||||||||||||| | || |||||||||||||| || ||| Sbjct 3870 CTGCGCGTCGGCACGCTCTACGGCAACAACCCGATACTCGCCAACACCGACGGGCGTCTG 3929 Query 395 TACCAGCAGACCAATACCGGGGTGCAACTGGTGTCCAGGGACCTCAGCGACTT 447 |||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 3930 TACCAGCAGACCAATACCGGTGTGCAACTGGTGTCCAAGGACCTCAGCGACTT 3982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1326240718720