Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001721.1 Length=387 Score E Sequences producing significant alignments: (Bits) Value seq76962 412 8e-113 >seq76962 Length=9529 Score = 412 bits (456), Expect = 8e-113 Identities = 325/392 (83%), Gaps = 6/392 (2%) Strand=Plus/Minus Query 1 CGAAACCGTGCGCTGTGTGGAGGAGGGCGTGTTGATGTCCACGGCGGATGCCAACGTTGG 60 ||| |||||||| || ||||||||||| ||||||||||| |||||||| || ||||| || Sbjct 2325 CGAGACCGTGCGTTGCGTGGAGGAGGGTGTGTTGATGTCTACGGCGGACGCGAACGTGGG 2266 Query 61 TTCAATCTTCGGCATCGGCTTTGCCGCGTGGAGTGGCGGCGCGTTGCAGTTTATCAACCA 120 || || |||||||| |||||||| || ||||| ||||||||||||||||| |||||||| Sbjct 2265 GTCGATTTTCGGCATTGGCTTTGCGGCCTGGAGCGGCGGCGCGTTGCAGTTCATCAACCA 2206 Query 121 GTACGGGCTGAACGACTTCATCGCCCGCGCCCGCTACCTGGCAGAGCAGTATGGGGAGCG 180 || ||||||||||||||||| |||||||| |||||| |||| ||||| ||||| || || Sbjct 2205 ATATGGGCTGAACGACTTCATTGCCCGCGCTCGCTACTTGGCTGAGCAATATGGCGAACG 2146 Query 181 CTTCTCGCCGCNNNNNNNNNNNNTGGAGAAAGCCGCGCAGGGTGAAGTGTTCCGGTAA-- 238 |||| |||| | |||||||||| ||||| ||||| |||||||||| | Sbjct 2145 CTTCACGCCACCGGCGTTGTTGCTGGAGAAAGCGGCGCAAGGTGACGTGTTCCGGTGACT 2086 Query 239 ---TCAAAATGTAGGAGGGGAGAGCTTGCTTTGAAGGTGTATTTCAAGGCAGGCTCTGGG 295 | || || ||| | | |||||| ||||||| |||||||||||||||||||||| Sbjct 2085 ATGTTCCGGTGAAGCAGGAG-GGGCTTGCCTTGAAGGGGTATTTCAAGGCAGGCTCTGGG 2027 Query 296 GTGTGCAATATTCCCATCGCCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCT 355 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 2026 GTGTGCAATATTCCCATCACCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGTATCCT 1967 Query 356 GGAAACCGATATTCTGCGCCCCGCTTTGATCG 387 |||||||||||| ||||| || | ||||||| Sbjct 1966 GGAAACCGATATCCTGCGTCCAGGCTTGATCG 1935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1134495072640