Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001745.1 Length=273 Score E Sequences producing significant alignments: (Bits) Value seq28282 315 1e-83 >seq28282 Length=2024 Score = 315 bits (348), Expect = 1e-83 Identities = 233/272 (86%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 2 CGGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGATC 61 ||| ||| |||| |||| |||| | ||| ||| ||||||||||| || | ||| ||| Sbjct 1103 CGGCGCCTCGGCACCAAATCGGTCCTTGGCGCAGCAACCGCCATTCATTGCATACAAATC 1162 Query 62 CAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGCGC 121 || ||||||||||||||||||||||| ||||| |||||||| || |||| ||||||||| Sbjct 1163 CAACCGCGTGCCGGCATACACCACCGGCGCGCCAGGTTGCGCCGCGTCCAACGTGCGCGC 1222 Query 122 GGTGGCACAGCCGGTGAGTTGCAGCGCCATCAAGAGCAGCAGTGCTTTATTCATCGCCGC 181 ||||| ||||| || ||||||||||||| || || |||||| || ||||||||||| || Sbjct 1223 CGTGGCGCAGCCCGTCAGTTGCAGCGCCAGCACGATCAGCAGCGCCTTATTCATCGCTGC 1282 Query 182 CCAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTTGAGAA 241 || |||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 1283 TCAAATGGTGCTCGCCCCAACGCGGCAGCATGTCCTGGGGAATGTTCAGCAGGTTGAGAA 1342 Query 242 TGCGCGCCACCACAAAGTCCACCAGGTCATCG 273 |||||||||||||||| ||||||||||||||| Sbjct 1343 TGCGCGCCACCACAAAATCCACCAGGTCATCG 1374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 773406165048