Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001757.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq98347 470 4e-130 >seq98347 Length=19400 Score = 470 bits (520), Expect = 4e-130 Identities = 349/415 (84%), Gaps = 0/415 (0%) Strand=Plus/Minus Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60 ||||||| ||||||||||||||||||||||| || |||||||||| |||||||||||||| Sbjct 18554 CGACGTTGGGGCTCTGGAAGCCGACGTCATAAATATGGAAGCCCAGGTGCATGATCTTCT 18495 Query 61 GGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCACNN 120 |||||||||||||||| |||||||| || |||| ||||| ||||||||||| ||||| Sbjct 18494 GGTCCAGGTGCAGGTACGGGTAGTTGCCATCCAGCGGCAGTGACGGCGCCAGTTTCACCA 18435 Query 121 NNNNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGC 180 ||||||||||||||| ||||||||||||||||||||||||| Sbjct 18434 CGCCGACCAGCATCAGCGGCGCCACTTCACCGGCGGCGCGGGCCACGGCGAGGATCATGC 18375 Query 181 CGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTTGG 240 ||||| |||| |||||||| ||||| |||| ||||||||||||||||| || ||||||| Sbjct 18374 CGGTCATCATCGCCGGGCTGGCCATCGGCAGCACGATCTTCCACAGCGTTTCCGCCTTGG 18315 Query 241 TCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAATACGCGCCAAACCTTCTT 300 ||||||||| ||||| ||||| || || ||||| || ||||| ||||||| ||||||| Sbjct 18314 TCGCGCCCAGTGCCAGGGAGCCTTCACGTACGGTGCGAGGAATCCGCGCCAGGCCTTCTT 18255 Query 301 CGGTGGCCACGATCACCACCGGAACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAGCA 360 |||||||||||||||||||||| || |||||||| |||||||||| ||| ||||||| || Sbjct 18254 CGGTGGCCACGATCACCACCGGCACCGCCAGCAGCGCCAGGGTCAGCGAGGCCCACAACA 18195 Query 361 GGTCCGGGGTACCCAAGGTCGGCGCCGGCAGTGCTTCGGGGAAGACCAAGCGGTC 415 || |||| ||||| |||||||| |||||||| ||||||| ||||| || |||||| Sbjct 18194 GGCCCGGCGTACCGAAGGTCGGGGCCGGCAGGGCTTCGGCGAAGAACAGGCGGTC 18140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1239955177984