Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001766.1 Length=199 Score E Sequences producing significant alignments: (Bits) Value seq29338 89.7 6e-16 seq50236 80.6 3e-13 seq76147 78.8 1e-12 >seq29338 Length=2142 Score = 89.7 bits (98), Expect = 6e-16 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 20 GATGGCATCGACTCGGTGCATCTGATACATCGAGTCGCCCGCATCGCAGGCAAGCCAGCT 79 ||||||||| |||||| | |||||| | |||||||||||||||||||||||||||||| Sbjct 559 GATGGCATCCCCTCGGTTCTACTGATAGACCGAGTCGCCCGCATCGCAGGCAAGCCAGCT 618 Query 80 CCCACACAA 88 |||||| || Sbjct 619 CCCACAGAA 627 >seq50236 Length=3136 Score = 80.6 bits (88), Expect = 3e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 20 GATGGCATCGACTCGGTGCATCTGATACATCGAGTCGCCCGCATCGCAGGCAAGCCAGCT 79 ||| |||||| ||||||| ||| | | | ||||||||| |||||||||||||||||||| Sbjct 2979 GATCGCATCGCCTCGGTGTATCAGGCAGACCGAGTCGCCTGCATCGCAGGCAAGCCAGCT 2920 Query 80 CCCACAC 86 ||||||| Sbjct 2919 CCCACAC 2913 >seq76147 Length=9180 Score = 78.8 bits (86), Expect = 1e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 20 GATGGCATCGACTCGGTGCATCTGATACATCGAGTCGCCCGCATCGCAGGCAAGCCAGCT 79 |||||||||| | ||| |||||| | |||||||||||||||||||||||||||||| Sbjct 5095 GATGGCATCGCCCTGGTCTGACTGATAGACCGAGTCGCCCGCATCGCAGGCAAGCCAGCT 5154 Query 80 CCCACA 85 |||||| Sbjct 5155 CCCACA 5160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536910064992