Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq131474 288 1e-75
seq130631 131 2e-28
seq125715 131 2e-28
seq111469 131 2e-28
seq108251 131 2e-28
seq131001 96.9 4e-18
>seq131474
Length=103143
Score = 288 bits (318), Expect = 1e-75
Identities = 179/191 (94%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 37588 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 37529
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 37528 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 37470
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 37469 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTC 37410
Query 181 TTGGATTTATT 191
||||||| |||
Sbjct 37409 TTGGATTGATT 37399
Score = 288 bits (318), Expect = 1e-75
Identities = 179/191 (94%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 46153 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 46094
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 46093 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 46035
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 46034 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTC 45975
Query 181 TTGGATTTATT 191
||||||| |||
Sbjct 45974 TTGGATTGATT 45964
Score = 131 bits (144), Expect = 2e-28
Identities = 140/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 70222 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 70163
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 70162 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 70105
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 70104 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 70045
Query 190 T 190
|
Sbjct 70044 T 70044
>seq130631
Length=123029
Score = 131 bits (144), Expect = 2e-28
Identities = 140/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 51551 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 51492
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 51491 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 51434
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 51433 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 51374
Query 190 T 190
|
Sbjct 51373 T 51373
Score = 131 bits (144), Expect = 2e-28
Identities = 140/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 102017 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 101958
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 101957 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 101900
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 101899 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 101840
Query 190 T 190
|
Sbjct 101839 T 101839
>seq125715
Length=54709
Score = 131 bits (144), Expect = 2e-28
Identities = 140/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 21532 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 21473
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 21472 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 21415
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 21414 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 21355
Query 190 T 190
|
Sbjct 21354 T 21354
>seq111469
Length=30026
Score = 131 bits (144), Expect = 2e-28
Identities = 140/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 11290 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 11231
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 11230 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 11173
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 11172 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 11113
Query 190 T 190
|
Sbjct 11112 T 11112
>seq108251
Length=27153
Score = 131 bits (144), Expect = 2e-28
Identities = 140/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 24471 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 24412
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 24411 GGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA-GTAATGA 24354
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 24353 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 24294
Query 190 T 190
|
Sbjct 24293 T 24293
>seq131001
Length=88751
Score = 96.9 bits (106), Expect = 4e-18
Identities = 131/179 (73%), Gaps = 3/179 (2%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGG 71
|||||||||| ||||||||| | || || || ||| | ||| | |||||||| |||||
Sbjct 12444 TTTACTTTGATGAAATTAGAGTGCTCTAAACAATCCTATTCTCTGTATACATTAGCATGG 12503
Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131
|||| | |||||| | ||| | ||||| | | || |||| | ||||||||
Sbjct 12504 GATAAGATGATAGGATTTT-GGTCCAATTTTCTTGCCTTTCAGGATTGGA-GTAATGATT 12561
Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190
|| | ||| ||| ||||| | ||||| || || | |||||||||||||||||||||
Sbjct 12562 AACATGGACAGTTGGGGGCATTCGTATTTCATAGTTAGAGGTGAAATTCTTGGATTTAT 12620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511342919040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |