Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001951.1 Length=416 Score E Sequences producing significant alignments: (Bits) Value seq108356 517 3e-144 seq122466 179 9e-43 seq48667 78.8 2e-12 >seq108356 Length=26816 Score = 517 bits (572), Expect = 3e-144 Identities = 364/416 (88%), Gaps = 0/416 (0%) Strand=Plus/Minus Query 1 TCCATCCCAACGCCATGACCCAGGTGGTGTTTGGCGAAAACGGCGAGCTGCACCGCGACA 60 |||| |||||||||||||| | ||||||||| || || || || || ||||||||||| | Sbjct 13246 TCCACCCCAACGCCATGACACTGGTGGTGTTCGGTGACAAGGGTGAACTGCACCGCGATA 13187 Query 61 CCTATTACTCGGTGGGTGGCGGTTTCGTGGTGGATGAAGCCCAGGCCCAAAGCGGTGTGG 120 |||| || || ||||| |||||||| || ||||||||||||||||| |||||||| |||| Sbjct 13186 CCTACTATTCAGTGGGCGGCGGTTTTGTAGTGGATGAAGCCCAGGCGCAAAGCGGCGTGG 13127 Query 121 CGGACATGGACCGTACCGAGCTGCCCTATGATTTTTCCAGTGCCGTGGAGCTGTTGCAGC 180 | || ||||||||||||||| |||| || || |||||||| || ||||||||| ||||| Sbjct 13126 CCGATATGGACCGTACCGAGTTGCCTTACGACTTTTCCAGCGCGGTGGAGCTGCTGCAGT 13067 Query 181 TGTGCAAGACCCACAACCTGCGCGTTGCCGAACTGATGCTGGCGAATGAAAAAACCTGGC 240 ||||||||||||||||||||||||| || || |||||||||| || ||||||||||||| Sbjct 13066 TGTGCAAGACCCACAACCTGCGCGTCGCGGAGTTGATGCTGGCTAACGAAAAAACCTGGC 13007 Query 241 GCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGATTGCG 300 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13006 GCTCCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGATTGCG 12947 Query 301 TGGAGCAGGGCCTCAAGCACGAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCCGTCGCG 360 ||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| |||| Sbjct 12946 TGGAGCAGGGCCTCAAGCACGAAGGCATCCTGCCTGGCGGCCTGAACGTGCGCCGCCGCG 12887 Query 361 CTGCCAAGTTACACCGCAGCTTGCAGGAGCTGAACAAGCCCAATGTGATCGGCTCG 416 | |||||||| || |||||| |||| ||| || ||||| || |||||||| ||| Sbjct 12886 CCGCCAAGTTGCATCGCAGCCTGCAAGAGTTGGGTAAGCCGAACGTGATCGGTTCG 12831 >seq122466 Length=45916 Score = 179 bits (198), Expect = 9e-43 Identities = 291/413 (70%), Gaps = 8/413 (2%) Strand=Plus/Minus Query 2 CCATCCCAACGCCATGACCCAGGTGGTGTTTGGCGAAAACGGCGAGCTGCACCGCG-ACA 60 ||| || ||||||||| ||| | | | |||||||||||| |||| | || | | | Sbjct 38080 CCACCCGAACGCCATGTCCCTGCACGCCTACGGCGAAAACGGCCTGCTG-AGCGAGCAAA 38022 Query 61 CCTATTACTCGGTGGGTGGCGGTTTCGTGGTGGATGAAGCCCA---GGCCCAAAGCGGTG 117 |||||||||| | || ||||||||| | | || | || | |||| || || Sbjct 38021 CCTATTACTCCATAGGCGGCGGTTTCATCATCGAAGCGGCGGAAGCGGCCTCGGGCATTG 37962 Query 118 TGGCGGACATGGACCGTACCGAGCTGCCCTATGATTTTTCCAGTGCCGTGGAGCTGTTGC 177 | || || || || || ||||||| || |||||||| ||||| || || || Sbjct 37961 CGCCGACCAGCGAT-GTG--GAATTGCCCTACGACTTTTCCAGCGCCGTAGAACTACTGG 37905 Query 178 AGCTGTGCAAGACCCACAACCTGCGCGTTGCCGAACTGATGCTGGCGAATGAAAAAACCT 237 ||||||| | ||| |||||| ||| |||| |||||| |||| || ||| | | Sbjct 37904 CCTTGTGCAACAAGCACGGCCTGCGGGTTTCCGAGCTGATGATGGCCAACGAACGCGCGT 37845 Query 238 GGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGATT 297 |||||||||| | || |||||||| |||||| || | ||||| | |||| || | Sbjct 37844 GGCGCAGCGACGCCGACATCCGCAGTGGCCTGTTGCACATCTGGTCGGTAATGCGTGAAT 37785 Query 298 GCGTGGAGCAGGGCCTCAAGCACGAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCCGTC 357 |||||||||||||||| | ||||| ||| |||| |||||| || |||||| ||||| Sbjct 37784 GCGTGGAGCAGGGCCTGCGCGATGAAGGCATCTTGCCAGGCGGCCTGGACGTGCCCCGTC 37725 Query 358 GCGCTGCCAAGTTACACCGCAGCTTGCAGGAGCTGAACAAGCCCAATGTGATC 410 |||| || || || ||||||||| ||| ||| | |||||| ||||| ||| Sbjct 37724 GCGCGGCGAAATTGCACCGCAGCCTGCTGGAAATCGGCAAGCCGAATGTCATC 37672 >seq48667 Length=3036 Score = 78.8 bits (86), Expect = 2e-12 Identities = 110/152 (72%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 214 TGATGCTGGCGAATGAAAAAACCTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGA 273 |||||||| | || || | |||||||| || | |||| |||| ||| ||| ||| Sbjct 652 TGATGCTGACCAACGAGAGCGCCTGGCGCCCGGAGGCGGAAACCCGCGCCGGGCTGCTGA 711 Query 274 AACTCTGGCGCGCCATGCAGGATTGCGTGGAGCAGGGCCTCAAGCA-CGAAGGTATCCTG 332 | |||||| | |||||||| || ||||| |||| | ||| |||||| || ||| Sbjct 712 AGATCTGGCAAGTGATGCAGGACTGTGTGGACGCGGGC-TGTCGCAACGAAGGGATTCTG 770 Query 333 CCCGGCGGCTTGAACGTGCGCCGTCGCGCTGC 364 |||||||||||||| || |||||||| || Sbjct 771 CCCGGCGGCTTGAAGGTCAAGCGTCGCGCCGC 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1227172134912