Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01001951.1
Length=416
Score E
Sequences producing significant alignments: (Bits) Value
seq108356 517 3e-144
seq122466 179 9e-43
seq48667 78.8 2e-12
>seq108356
Length=26816
Score = 517 bits (572), Expect = 3e-144
Identities = 364/416 (88%), Gaps = 0/416 (0%)
Strand=Plus/Minus
Query 1 TCCATCCCAACGCCATGACCCAGGTGGTGTTTGGCGAAAACGGCGAGCTGCACCGCGACA 60
|||| |||||||||||||| | ||||||||| || || || || || ||||||||||| |
Sbjct 13246 TCCACCCCAACGCCATGACACTGGTGGTGTTCGGTGACAAGGGTGAACTGCACCGCGATA 13187
Query 61 CCTATTACTCGGTGGGTGGCGGTTTCGTGGTGGATGAAGCCCAGGCCCAAAGCGGTGTGG 120
|||| || || ||||| |||||||| || ||||||||||||||||| |||||||| ||||
Sbjct 13186 CCTACTATTCAGTGGGCGGCGGTTTTGTAGTGGATGAAGCCCAGGCGCAAAGCGGCGTGG 13127
Query 121 CGGACATGGACCGTACCGAGCTGCCCTATGATTTTTCCAGTGCCGTGGAGCTGTTGCAGC 180
| || ||||||||||||||| |||| || || |||||||| || ||||||||| |||||
Sbjct 13126 CCGATATGGACCGTACCGAGTTGCCTTACGACTTTTCCAGCGCGGTGGAGCTGCTGCAGT 13067
Query 181 TGTGCAAGACCCACAACCTGCGCGTTGCCGAACTGATGCTGGCGAATGAAAAAACCTGGC 240
||||||||||||||||||||||||| || || |||||||||| || |||||||||||||
Sbjct 13066 TGTGCAAGACCCACAACCTGCGCGTCGCGGAGTTGATGCTGGCTAACGAAAAAACCTGGC 13007
Query 241 GCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGATTGCG 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13006 GCTCCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGATTGCG 12947
Query 301 TGGAGCAGGGCCTCAAGCACGAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCCGTCGCG 360
||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||
Sbjct 12946 TGGAGCAGGGCCTCAAGCACGAAGGCATCCTGCCTGGCGGCCTGAACGTGCGCCGCCGCG 12887
Query 361 CTGCCAAGTTACACCGCAGCTTGCAGGAGCTGAACAAGCCCAATGTGATCGGCTCG 416
| |||||||| || |||||| |||| ||| || ||||| || |||||||| |||
Sbjct 12886 CCGCCAAGTTGCATCGCAGCCTGCAAGAGTTGGGTAAGCCGAACGTGATCGGTTCG 12831
>seq122466
Length=45916
Score = 179 bits (198), Expect = 9e-43
Identities = 291/413 (70%), Gaps = 8/413 (2%)
Strand=Plus/Minus
Query 2 CCATCCCAACGCCATGACCCAGGTGGTGTTTGGCGAAAACGGCGAGCTGCACCGCG-ACA 60
||| || ||||||||| ||| | | | |||||||||||| |||| | || | | |
Sbjct 38080 CCACCCGAACGCCATGTCCCTGCACGCCTACGGCGAAAACGGCCTGCTG-AGCGAGCAAA 38022
Query 61 CCTATTACTCGGTGGGTGGCGGTTTCGTGGTGGATGAAGCCCA---GGCCCAAAGCGGTG 117
|||||||||| | || ||||||||| | | || | || | |||| || ||
Sbjct 38021 CCTATTACTCCATAGGCGGCGGTTTCATCATCGAAGCGGCGGAAGCGGCCTCGGGCATTG 37962
Query 118 TGGCGGACATGGACCGTACCGAGCTGCCCTATGATTTTTCCAGTGCCGTGGAGCTGTTGC 177
| || || || || || ||||||| || |||||||| ||||| || || ||
Sbjct 37961 CGCCGACCAGCGAT-GTG--GAATTGCCCTACGACTTTTCCAGCGCCGTAGAACTACTGG 37905
Query 178 AGCTGTGCAAGACCCACAACCTGCGCGTTGCCGAACTGATGCTGGCGAATGAAAAAACCT 237
||||||| | ||| |||||| ||| |||| |||||| |||| || ||| | |
Sbjct 37904 CCTTGTGCAACAAGCACGGCCTGCGGGTTTCCGAGCTGATGATGGCCAACGAACGCGCGT 37845
Query 238 GGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGAAACTCTGGCGCGCCATGCAGGATT 297
|||||||||| | || |||||||| |||||| || | ||||| | |||| || |
Sbjct 37844 GGCGCAGCGACGCCGACATCCGCAGTGGCCTGTTGCACATCTGGTCGGTAATGCGTGAAT 37785
Query 298 GCGTGGAGCAGGGCCTCAAGCACGAAGGTATCCTGCCCGGCGGCTTGAACGTGCGCCGTC 357
|||||||||||||||| | ||||| ||| |||| |||||| || |||||| |||||
Sbjct 37784 GCGTGGAGCAGGGCCTGCGCGATGAAGGCATCTTGCCAGGCGGCCTGGACGTGCCCCGTC 37725
Query 358 GCGCTGCCAAGTTACACCGCAGCTTGCAGGAGCTGAACAAGCCCAATGTGATC 410
|||| || || || ||||||||| ||| ||| | |||||| ||||| |||
Sbjct 37724 GCGCGGCGAAATTGCACCGCAGCCTGCTGGAAATCGGCAAGCCGAATGTCATC 37672
>seq48667
Length=3036
Score = 78.8 bits (86), Expect = 2e-12
Identities = 110/152 (72%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 214 TGATGCTGGCGAATGAAAAAACCTGGCGCAGCGAAGAAGAAATCCGCAGCGGCCTGATGA 273
|||||||| | || || | |||||||| || | |||| |||| ||| ||| |||
Sbjct 652 TGATGCTGACCAACGAGAGCGCCTGGCGCCCGGAGGCGGAAACCCGCGCCGGGCTGCTGA 711
Query 274 AACTCTGGCGCGCCATGCAGGATTGCGTGGAGCAGGGCCTCAAGCA-CGAAGGTATCCTG 332
| |||||| | |||||||| || ||||| |||| | ||| |||||| || |||
Sbjct 712 AGATCTGGCAAGTGATGCAGGACTGTGTGGACGCGGGC-TGTCGCAACGAAGGGATTCTG 770
Query 333 CCCGGCGGCTTGAACGTGCGCCGTCGCGCTGC 364
|||||||||||||| || |||||||| ||
Sbjct 771 CCCGGCGGCTTGAAGGTCAAGCGTCGCGCCGC 802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1227172134912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |