Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001989.1 Length=469 Score E Sequences producing significant alignments: (Bits) Value seq57912 457 3e-126 >seq57912 Length=4052 Score = 457 bits (506), Expect = 3e-126 Identities = 310/348 (89%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 122 TACGGCGCCAAGGTGGTGCTGTCAGACAGCCGCCTCGGTAACAATTCCTACGGCGAAAAG 181 ||||| ||||||||||||||||| ||||||||||| || ||||| || ||||||||||| Sbjct 1 TACGGGGCCAAGGTGGTGCTGTCGGACAGCCGCCTGGGCAACAACTCTCACGGCGAAAAG 60 Query 182 TGCCTGGAACTGCAACTGGAAAACCCCAGCTACGTGATGCTCAACCAGCAACGCAATGGC 241 ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 61 TGCATGGAACTGCAGCTGGAAAACCCCAGCTACGTGATGCTCAACCAGCAGCGCAACGGC 120 Query 242 GCCAACCCGCAAACCCACCGCGACACCACCGCACCCGAGATCCTGCGCGCTTTTGGTGAG 301 |||||||| || ||||| ||||||||||||||||| || |||||||| || || |||||| Sbjct 121 GCCAACCCACAGACCCATCGCGACACCACCGCACCGGAAATCCTGCGTGCCTTCGGTGAG 180 Query 302 CGGCGCGTGGACTACTTCGTCAGCGGCATCGGCACCGGTGGCCACATCACCGGCATCGGC 361 | ||||| |||||||| |||||||||||||||||||| || || ||||| |||||||| Sbjct 181 CTGCGCGCCGACTACTTTGTCAGCGGCATCGGCACCGGGGGGCATATCACTGGCATCGGT 240 Query 362 GAAACCCTCAAGGCCGCCTGGCCGGAGCTGCGCGTCATGGGCGTGGAGCCGGAAGAGTGC 421 |||||||| || |||||||||||| | || ||||||||||||||||| |||||||||||| Sbjct 241 GAAACCCTGAAAGCCGCCTGGCCGCAACTACGCGTCATGGGCGTGGAACCGGAAGAGTGC 300 Query 422 GACCTGCTGAAAAACCAGCACGCGCCGCACCATATCCAGGGCCTGTCG 469 ||||||||||||||||||||||| ||||| || || |||||||||||| Sbjct 301 GACCTGCTGAAAAACCAGCACGCACCGCATCACATTCAGGGCCTGTCG 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1396547455616