Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01001997.1
Length=304
Score E
Sequences producing significant alignments: (Bits) Value
seq66948 367 2e-99
>seq66948
Length=5916
Score = 367 bits (406), Expect = 2e-99
Identities = 267/304 (88%), Gaps = 4/304 (1%)
Strand=Plus/Minus
Query 1 CCGCATCGTCAAACGCAGGGAACTTCGCCAGCTTCCATTCGGTTCCCCGAGTTTCttttt 60
||||||||||||| ||||||||||| |||| ||||||| |||| ||||||||| ||||
Sbjct 566 CCGCATCGTCAAATGCAGGGAACTT-GCCAA-TTCCATT-GGTTACCCGAGTTTAATTTT 510
Query 61 ttttCGCAAGCGGGCCAATCGTTGGCCACGCGACAGGGCATTCAAGCAGTTGAAATTAGA 120
||| ||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 509 TTT-CGCAAGCGGACCAGTCGTTGGTCACGCGACAGGGCATTCAAGCAGATGAAATTAGA 451
Query 121 AAATGCGCTCTAAACAGCAAGACCGTTGAGCTAGAGCATCAGCCGCACGACCGACTCACT 180
|||||| ||||||| ||||||| || |||||||||||||||| |||||||||| |
Sbjct 450 AAATGCCCTCTAAAGAGCAAGAGGCCTGGGCTAGAGCATCAGCCGTACGACCGACTGATC 391
Query 181 CGGATCGCGGGTTTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCACAAAGCGTC 240
||||||||||||||| || || |||||||| || ||||| || ||||||||||| |||||
Sbjct 390 CGGATCGCGGGTTTTGCCGGCTGCTTTGAGTTCAGCCAGATAATCGGCCCACAACGCGTC 331
Query 241 CTGACGTACGGCCAACTGATAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGACCGTC 300
|||||| ||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 330 CTGACGCACGGCCAGTTGGTAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGGCCGTC 271
Query 301 GTCG 304
||||
Sbjct 270 GTCG 267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 869246928896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |