Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001997.1 Length=304 Score E Sequences producing significant alignments: (Bits) Value seq66948 367 2e-99 >seq66948 Length=5916 Score = 367 bits (406), Expect = 2e-99 Identities = 267/304 (88%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 1 CCGCATCGTCAAACGCAGGGAACTTCGCCAGCTTCCATTCGGTTCCCCGAGTTTCttttt 60 ||||||||||||| ||||||||||| |||| ||||||| |||| ||||||||| |||| Sbjct 566 CCGCATCGTCAAATGCAGGGAACTT-GCCAA-TTCCATT-GGTTACCCGAGTTTAATTTT 510 Query 61 ttttCGCAAGCGGGCCAATCGTTGGCCACGCGACAGGGCATTCAAGCAGTTGAAATTAGA 120 ||| ||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||| Sbjct 509 TTT-CGCAAGCGGACCAGTCGTTGGTCACGCGACAGGGCATTCAAGCAGATGAAATTAGA 451 Query 121 AAATGCGCTCTAAACAGCAAGACCGTTGAGCTAGAGCATCAGCCGCACGACCGACTCACT 180 |||||| ||||||| ||||||| || |||||||||||||||| |||||||||| | Sbjct 450 AAATGCCCTCTAAAGAGCAAGAGGCCTGGGCTAGAGCATCAGCCGTACGACCGACTGATC 391 Query 181 CGGATCGCGGGTTTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCACAAAGCGTC 240 ||||||||||||||| || || |||||||| || ||||| || ||||||||||| ||||| Sbjct 390 CGGATCGCGGGTTTTGCCGGCTGCTTTGAGTTCAGCCAGATAATCGGCCCACAACGCGTC 331 Query 241 CTGACGTACGGCCAACTGATAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGACCGTC 300 |||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| Sbjct 330 CTGACGCACGGCCAGTTGGTAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGGCCGTC 271 Query 301 GTCG 304 |||| Sbjct 270 GTCG 267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 869246928896