Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01001999.1 Length=541 Score E Sequences producing significant alignments: (Bits) Value seq105819 268 3e-69 >seq105819 Length=24683 Score = 268 bits (296), Expect = 3e-69 Identities = 208/248 (84%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 282 CGCCAGTTCCTGCCACAGGGCGATGGTCTCGTCATCCGCCTGCTTGGGCATTACTGCCTT 341 ||||| ||||||||| || ||| ||| || || ||| |||||||| || |||| Sbjct 20472 CGCCAACGCCTGCCACAACGCCTTGGCCTCTTCGTCGACCTCTTTGGGCATCACCACCTT 20531 Query 342 GAGCTGGATGTACAGGAAACCTCGCTCCCCAGCCTTGTTCAGCAAGCCATGGCCCTTGGC 401 |||||| || ||||||| || |||||||| ||||||||||||||||||||||||||| Sbjct 20532 GAGCTGAATAAACAGGAAGCCGCGCTCCCCGCTCTTGTTCAGCAAGCCATGGCCCTTGGC 20591 Query 402 GCGCATGCGCTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCCGGTCAG 461 |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 20592 GCGCATACGCTGGCCGTTCTGGCTGCCAGCAGGCACCTTGAGGTTGATCTTGCCGGTCAG 20651 Query 462 GGTCGGCACGGCCACTTCGGCGCCCAGCGCCAGTTCCCACGGTGCCAGTGGCAAGGTGAT 521 |||||||| |||||||| | ||||| ||||| |||||||||||||| |||| ||||| Sbjct 20652 CGTCGGCACAGCCACTTCCGTGCCCAACGCCAACTCCCACGGTGCCAGGGGCACTGTGAT 20711 Query 522 CACCAGGT 529 |||| || Sbjct 20712 TACCAAGT 20719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1626642230912