Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01002003.1 Length=209 Score E Sequences producing significant alignments: (Bits) Value seq63530 105 8e-21 >seq63530 Length=5081 Score = 105 bits (116), Expect = 8e-21 Identities = 153/208 (74%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 1 CAAACAGCACGCGCACGTAGCGGCCCGAGGTCTTCGGGGCCGGTCCACAGGCCACCGGCG 60 ||||||||| ||||||| ||| |||||| ||||| || ||||| || |||||| Sbjct 4985 CAAACAGCATCTGCACGTAATGGCT-GAGGTCCCTGGGGCTGGCCCACAAACCGCCGGCG 4927 Query 61 GCGAGGTCACGCACCCGGGGGTCGGTGCCGGCCTTCGCCATCCTCGTAGCCGTGGGCGCG 120 |||| ||| |||| | | ||||||| ||| |||| |||| ||||| |||||||| Sbjct 4926 GCGATGTCGCGCAGTTGCGCATCGGTGCTGGCGA-CGCCTTCCTGATAGCCCTGGGCGCG 4868 Query 121 ATAGCTCATTTCGCGCACCGGTACCCAGGAAACTCGGACTGGTTCATTTCGCAAGGGTGT 180 ||||| |||| ||||| | || || | || ||| | |||| ||| || || ||| | Sbjct 4867 ATAGCCGATTT-GCGCAGCCGTCCCGACAAAGCTC-GCGTGGTCCATCTC-CAGCGGTTT 4811 Query 181 GAGCAGGCTGCTTTCGTAACTGGGCTTC 208 |||||||||| | | | | ||||||||| Sbjct 4810 GAGCAGGCTG-TGTTGCAGCTGGGCTTC 4784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568868997432