Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01002011.1
Length=284
Score E
Sequences producing significant alignments: (Bits) Value
seq72583 392 5e-107
seq68870 118 2e-24
seq61889 93.3 7e-17
>seq72583
Length=7821
Score = 392 bits (434), Expect = 5e-107
Identities = 258/284 (91%), Gaps = 1/284 (0%)
Strand=Plus/Plus
Query 1 TACGCCTTGCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCT 60
|||||| | |||||| ||||||| ||||| |||||||| ||||||| ||||||||||||
Sbjct 4211 TACGCCCTACGGCCGTTGGATTTTGCGGTATTCCCGACC-ATTCTGCTGGTGGCGACCCT 4269
Query 61 GCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGG 120
||| || ||||| ||||||| || || || || ||||| ||||| ||||||||||||||
Sbjct 4270 GCTGCGCCTGGCGCTGAACGTGGCGTCGACCCGTGTGGTCATGCTGCACGGCCAGGACGG 4329
Query 121 CCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4330 CCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTA 4389
Query 181 CGTGGTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAA 240
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 4390 CGTGGTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTCGTGGTGGTCACCAA 4449
Query 241 GGGCGCCGGGCGGATTTCCGAGGTGAGCGCGCGGTTTACCCTCG 284
||||||||||| || ||||| ||||||||||| ||||||||||
Sbjct 4450 AGGCGCCGGGCGCATCTCCGAAGTGAGCGCGCGTTTTACCCTCG 4493
>seq68870
Length=6510
Score = 118 bits (130), Expect = 2e-24
Identities = 189/270 (70%), Gaps = 1/270 (0%)
Strand=Plus/Minus
Query 13 CCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGGC 72
|||||||| ||| || || || ||| || |||| | | ||||| ||||| ||||||||
Sbjct 6389 CCGCTGGAATTCTCGTCCTTTCCCACG-ATCCTGCTGATCGCGACGCTGCTGCGTCTGGC 6331
Query 73 ATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTGC 132
| |||| | |||||| || | || | |||| | | ||| | ||| ||
Sbjct 6330 CCTCGGGATCGCGACGACGCGGCTGATCCTGTCCAACGGGGATGCGGGCGTCGACGCGGC 6271
Query 133 CGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTAT 192
||| | || ||||||| |||| || | ||||| |||| ||| |||| |||| |
Sbjct 6270 CGGCCACGTCATCCAGGGCTTCTCGCAGTTCGTGATGAGCGGCGACTTCGTGATCGGGCT 6211
Query 193 CGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCG 252
|||||||||||| || ||||| | ||||||| | ||| | |||||||||||| |||
Sbjct 6210 CGTGGTGTTCGCCATTCTGATCACGGTCAACTTCCTCGTGATCACCAAGGGCGCCACGCG 6151
Query 253 GATTTCCGAGGTGAGCGCGCGGTTTACCCT 282
|| | ||||| ||||||| || |||||
Sbjct 6150 CATCGCGGAGGTCGGCGCGCGCTTCACCCT 6121
>seq61889
Length=4767
Score = 93.3 bits (102), Expect = 7e-17
Identities = 142/200 (71%), Gaps = 7/200 (4%)
Strand=Plus/Plus
Query 13 CCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGGC 72
|||||||| || | || |||||||||| | |||| | || || |||| || || ||
Sbjct 4572 CCGCTGGAATTTACCGTTTTCCCGACGT-TGCTGCTCATCGCCACGATGCTGCGGCTCGC 4630
Query 73 ATTGAACGTCGCCTCCACGCGGGTGGTGATGCTC---CACGGCCAGGACGGCCATGCCGC 129
|||| ||||||| || || || || ||| ||||| || || ||| |||||
Sbjct 4631 CCTGAATCTCGCCTCGACCCGCCTG---ATCCTCGGGCACGGACACGAGGGCACCGCCGC 4687
Query 130 TGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGG 189
|| ||| | || ||| |||| ||||| | | || || ||||| |||| |||| ||||
Sbjct 4688 CGCGGGTCACGTCATCGAGGCGTTCGGCCATTTCGTCATGGGCGGCAACTTCGTGATCGG 4747
Query 190 TATCGTGGTGTTCGCGATCC 209
||| | |||||||||||||
Sbjct 4748 GATCATCGTGTTCGCGATCC 4767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 808560990732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |