Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01002011.1 Length=284 Score E Sequences producing significant alignments: (Bits) Value seq72583 392 5e-107 seq68870 118 2e-24 seq61889 93.3 7e-17 >seq72583 Length=7821 Score = 392 bits (434), Expect = 5e-107 Identities = 258/284 (91%), Gaps = 1/284 (0%) Strand=Plus/Plus Query 1 TACGCCTTGCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCT 60 |||||| | |||||| ||||||| ||||| |||||||| ||||||| |||||||||||| Sbjct 4211 TACGCCCTACGGCCGTTGGATTTTGCGGTATTCCCGACC-ATTCTGCTGGTGGCGACCCT 4269 Query 61 GCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGG 120 ||| || ||||| ||||||| || || || || ||||| ||||| |||||||||||||| Sbjct 4270 GCTGCGCCTGGCGCTGAACGTGGCGTCGACCCGTGTGGTCATGCTGCACGGCCAGGACGG 4329 Query 121 CCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4330 CCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTA 4389 Query 181 CGTGGTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAA 240 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 4390 CGTGGTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTCGTGGTGGTCACCAA 4449 Query 241 GGGCGCCGGGCGGATTTCCGAGGTGAGCGCGCGGTTTACCCTCG 284 ||||||||||| || ||||| ||||||||||| |||||||||| Sbjct 4450 AGGCGCCGGGCGCATCTCCGAAGTGAGCGCGCGTTTTACCCTCG 4493 >seq68870 Length=6510 Score = 118 bits (130), Expect = 2e-24 Identities = 189/270 (70%), Gaps = 1/270 (0%) Strand=Plus/Minus Query 13 CCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGGC 72 |||||||| ||| || || || ||| || |||| | | ||||| ||||| |||||||| Sbjct 6389 CCGCTGGAATTCTCGTCCTTTCCCACG-ATCCTGCTGATCGCGACGCTGCTGCGTCTGGC 6331 Query 73 ATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGGCCATGCCGCTGC 132 | |||| | |||||| || | || | |||| | | ||| | ||| || Sbjct 6330 CCTCGGGATCGCGACGACGCGGCTGATCCTGTCCAACGGGGATGCGGGCGTCGACGCGGC 6271 Query 133 CGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTAT 192 ||| | || ||||||| |||| || | ||||| |||| ||| |||| |||| | Sbjct 6270 CGGCCACGTCATCCAGGGCTTCTCGCAGTTCGTGATGAGCGGCGACTTCGTGATCGGGCT 6211 Query 193 CGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCG 252 |||||||||||| || ||||| | ||||||| | ||| | |||||||||||| ||| Sbjct 6210 CGTGGTGTTCGCCATTCTGATCACGGTCAACTTCCTCGTGATCACCAAGGGCGCCACGCG 6151 Query 253 GATTTCCGAGGTGAGCGCGCGGTTTACCCT 282 || | ||||| ||||||| || ||||| Sbjct 6150 CATCGCGGAGGTCGGCGCGCGCTTCACCCT 6121 >seq61889 Length=4767 Score = 93.3 bits (102), Expect = 7e-17 Identities = 142/200 (71%), Gaps = 7/200 (4%) Strand=Plus/Plus Query 13 CCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCTGCTACGTCTGGC 72 |||||||| || | || |||||||||| | |||| | || || |||| || || || Sbjct 4572 CCGCTGGAATTTACCGTTTTCCCGACGT-TGCTGCTCATCGCCACGATGCTGCGGCTCGC 4630 Query 73 ATTGAACGTCGCCTCCACGCGGGTGGTGATGCTC---CACGGCCAGGACGGCCATGCCGC 129 |||| ||||||| || || || || ||| ||||| || || ||| ||||| Sbjct 4631 CCTGAATCTCGCCTCGACCCGCCTG---ATCCTCGGGCACGGACACGAGGGCACCGCCGC 4687 Query 130 TGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGG 189 || ||| | || ||| |||| ||||| | | || || ||||| |||| |||| |||| Sbjct 4688 CGCGGGTCACGTCATCGAGGCGTTCGGCCATTTCGTCATGGGCGGCAACTTCGTGATCGG 4747 Query 190 TATCGTGGTGTTCGCGATCC 209 ||| | ||||||||||||| Sbjct 4748 GATCATCGTGTTCGCGATCC 4767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 808560990732