Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01002049.1
Length=571
Score E
Sequences producing significant alignments: (Bits) Value
seq65538 425 2e-116
seq34525 407 5e-111
>seq65538
Length=5522
Score = 425 bits (470), Expect = 2e-116
Identities = 274/299 (92%), Gaps = 3/299 (1%)
Strand=Plus/Minus
Query 276 ATTACGCTGGTGTTGTTCGTGGTGGTGTACTTCGCGCTGTTCGGTGCCGGTCTGGGCTAC 335
|| || |||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 5522 ATCACCCTGGTGTTGTTCGTGGTGGTGTACTTCGCGCTGTTCGGCGCAGGCCTGGGCTAC 5463
Query 336 ATGATGCGCCTGGTGCGCAAAGGTCCGCAGACCCACGAAGGCGATGAGCCGACCCACGGT 395
||||||||||||||||||||||| || |||||||||| || ||||| |||||||||
Sbjct 5462 ATGATGCGCCTGGTGCGCAAAGGCCCTGTGACCCACGAAAGCACCGAGCCAACCCACGGT 5403
Query 396 GGTCCTGGCCAGAAACGCACGCCAGCCCGTCCGTTGTCTGCCGCCGAT---GATGGCAGC 452
|| ||||||||||||||||| || |||||||||||||| ||||||||| ||||||| |
Sbjct 5402 GGCCCTGGCCAGAAACGCACACCGGCCCGTCCGTTGTCCGCCGCCGATGATGATGGCAAC 5343
Query 453 GATGACGACCACACCCACATCCAGCACAAGGGGCATTGAGATGGGTATTGATCTTCCGCT 512
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5342 GATGACGACCGCACCCACATCCAGCACAAGGGGCATTGAGATGGGTATTGATCTTCCGCT 5283
Query 513 GATCCGGGCCGTGATCATCATCTTCGGCATCATGATGTACGTGGTCATGGACGGCTTCG 571
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 5282 GATCTGGGCCGTGATCATTATCTTCGGCATCATGATGTACGTGGTCATGGACGGCTTCG 5224
>seq34525
Length=2433
Score = 407 bits (450), Expect = 5e-111
Identities = 270/297 (91%), Gaps = 2/297 (1%)
Strand=Plus/Plus
Query 4 TCGACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTC 63
|||||| ||| |||| ||||||||||||||| |||||||| ||||||||||||||| |||
Sbjct 2139 TCGACCATCGTGTTCTGGTCGTTCCGGGTCATGGTCGGCCTGGGCTTCCTGATGATTTTC 2198
Query 64 ACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGT 123
|||||||| |||||||| ||||| |||||||||||||||||||||||| ||||| ||||
Sbjct 2199 ACCGGTCT-GTTCAGCCTCTGGCT-GCGCCGGGGCGACAAGATGTACACATCCAAACCGT 2256
Query 124 TCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGT 183
|||| |||||||||||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct 2257 TCCTCTACCTGGCGTTGTGGATGGGGCCGTCCGGCCTGATCGCGATTCTTGCCGGCTGGT 2316
Query 184 TCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATG 243
||||||| || ||||||||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 2317 TCACCACCGAGATCGGCCGTCAGCCGTGGGTGGTGTATGGCTTGATGCGCACGGCGGATG 2376
Query 244 CGTCCTCCGGGCATAGCCTGGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGTGG 300
| || |||||||||||||||| |||||||||||| || |||||||||||||||||||
Sbjct 2377 CTTCATCCGGGCATAGCCTGGCGCAGATGACGATCACCCTGGTGTTGTTCGTGGTGG 2433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1722515053952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |