Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01002049.1 Length=571 Score E Sequences producing significant alignments: (Bits) Value seq65538 425 2e-116 seq34525 407 5e-111 >seq65538 Length=5522 Score = 425 bits (470), Expect = 2e-116 Identities = 274/299 (92%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 276 ATTACGCTGGTGTTGTTCGTGGTGGTGTACTTCGCGCTGTTCGGTGCCGGTCTGGGCTAC 335 || || |||||||||||||||||||||||||||||||||||||| || || ||||||||| Sbjct 5522 ATCACCCTGGTGTTGTTCGTGGTGGTGTACTTCGCGCTGTTCGGCGCAGGCCTGGGCTAC 5463 Query 336 ATGATGCGCCTGGTGCGCAAAGGTCCGCAGACCCACGAAGGCGATGAGCCGACCCACGGT 395 ||||||||||||||||||||||| || |||||||||| || ||||| ||||||||| Sbjct 5462 ATGATGCGCCTGGTGCGCAAAGGCCCTGTGACCCACGAAAGCACCGAGCCAACCCACGGT 5403 Query 396 GGTCCTGGCCAGAAACGCACGCCAGCCCGTCCGTTGTCTGCCGCCGAT---GATGGCAGC 452 || ||||||||||||||||| || |||||||||||||| ||||||||| ||||||| | Sbjct 5402 GGCCCTGGCCAGAAACGCACACCGGCCCGTCCGTTGTCCGCCGCCGATGATGATGGCAAC 5343 Query 453 GATGACGACCACACCCACATCCAGCACAAGGGGCATTGAGATGGGTATTGATCTTCCGCT 512 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5342 GATGACGACCGCACCCACATCCAGCACAAGGGGCATTGAGATGGGTATTGATCTTCCGCT 5283 Query 513 GATCCGGGCCGTGATCATCATCTTCGGCATCATGATGTACGTGGTCATGGACGGCTTCG 571 |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 5282 GATCTGGGCCGTGATCATTATCTTCGGCATCATGATGTACGTGGTCATGGACGGCTTCG 5224 >seq34525 Length=2433 Score = 407 bits (450), Expect = 5e-111 Identities = 270/297 (91%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 4 TCGACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTC 63 |||||| ||| |||| ||||||||||||||| |||||||| ||||||||||||||| ||| Sbjct 2139 TCGACCATCGTGTTCTGGTCGTTCCGGGTCATGGTCGGCCTGGGCTTCCTGATGATTTTC 2198 Query 64 ACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGT 123 |||||||| |||||||| ||||| |||||||||||||||||||||||| ||||| |||| Sbjct 2199 ACCGGTCT-GTTCAGCCTCTGGCT-GCGCCGGGGCGACAAGATGTACACATCCAAACCGT 2256 Query 124 TCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGT 183 |||| |||||||||||||||||||| |||||||| ||||||||||||| |||||||||| Sbjct 2257 TCCTCTACCTGGCGTTGTGGATGGGGCCGTCCGGCCTGATCGCGATTCTTGCCGGCTGGT 2316 Query 184 TCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATG 243 ||||||| || ||||||||||||||||||||||| || ||| |||||||||||||||||| Sbjct 2317 TCACCACCGAGATCGGCCGTCAGCCGTGGGTGGTGTATGGCTTGATGCGCACGGCGGATG 2376 Query 244 CGTCCTCCGGGCATAGCCTGGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGTGG 300 | || |||||||||||||||| |||||||||||| || ||||||||||||||||||| Sbjct 2377 CTTCATCCGGGCATAGCCTGGCGCAGATGACGATCACCCTGGTGTTGTTCGTGGTGG 2433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1722515053952