Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01002051.1 Length=353 Score E Sequences producing significant alignments: (Bits) Value seq81301 529 4e-148 >seq81301 Length=11159 Score = 529 bits (586), Expect = 4e-148 Identities = 329/353 (93%), Gaps = 0/353 (0%) Strand=Plus/Minus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 |||||||||||||||||| || |||||||| ||| ||||||| ||||||||||| ||||| Sbjct 9315 CGACCGCCTGCGCCATGTAGCCGAGCGCGCTGAGTTGGGTGAGGGCCGCGAAGCCATCAT 9256 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 9255 CGCCGTGACCATCCCCGAGAAACCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 9196 Query 121 GCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTGT 180 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 9195 GCGCCAGATCACCGAATTCAACTACCGCTTCCACTCCGGCAGCGAGGCGCACATCTTTGT 9136 Query 181 CGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCGA 240 |||||||||||||||||| || | |||||| ||||| |||||||||||||||||||| | Sbjct 9135 CGGCGTGCAGACCCACCCGGAAAACGACCCGCGCAGTGCGCTGATCGCCAGCCTGACAGG 9076 Query 241 GCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCA 300 || ||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct 9075 CCATGGTTTTCCGGTGCTGGACCTGACCGAGAACGAACTGGCCAAGTTGCACATCCGCCA 9016 Query 301 TATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGTGTTCCGCTTCG 353 ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 9015 TATGGTCGGCGGCCATGCGGCTCACGTCAGCAATGAAGTGGTGTTTCGCTTCG 8963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1025839206528