Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01002062.1 Length=351 Score E Sequences producing significant alignments: (Bits) Value seq20343 453 2e-125 >seq20343 Length=1358 Score = 453 bits (502), Expect = 2e-125 Identities = 313/351 (89%), Gaps = 5/351 (1%) Strand=Plus/Plus Query 1 ACCAGGTCACCATCGTCGGCGCCGAATGCCGACCACGGTGCCGGTGTACCAGCGGGGTGA 60 |||||||| ||||||||||| |||| ||| |||||| ||||||||| ||||| ||||||| Sbjct 315 ACCAGGTCGCCATCGTCGGCACCGA-TGCTGACCACCGTGCCGGTG-ACCAGTGGGGTGA 372 Query 61 TTTCCACCACGTCGCCGTTCACATAGGCGTCATCGGTGCTTTCATTGAAGCGCCCGTAGA 120 |||||||||||| ||| ||||||||||| || |||||||||||||||||||| ||||||| Sbjct 373 TTTCCACCACGTTGCCATTCACATAGGCATCGTCGGTGCTTTCATTGAAGCGGCCGTAGA 432 Query 121 ACTCATACCAGGCCCACACGCCCACCACACTGAGGATGACGATCAGCGCCAGGCCGATCA 180 ||||||||| ||||||||||||| || |||||||||||||||||||||||||||| Sbjct 433 GTTCATACCAGCCCCACACGCCCACTACCGCCAGGATGACGATCAGCGCCAGGCCGATCA 492 Query 181 GCATCACTTTGCGTTTGCGCGGGTTGGTGTCTTTGGGTTGTTCGGTCGCGTTGGTGCTTT 240 ||||||||||||||||||| |||||| |||| ||||||||||| || ||||||||| ||| Sbjct 493 GCATCACTTTGCGTTTGCGGGGGTTGCTGTCCTTGGGTTGTTCAGTTGCGTTGGTGTTTT 552 Query 241 CGGCAGTGGCCATGACAAATACCTCAAATTATTCCGTGCGTGTTGCGGGGGTGGTCGCGG 300 |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 553 CGGCAGTGGCCATGACAAATACCTCAAATTATTCCGAGCG---GGCGGGGGTGGTCGCGG 609 Query 301 CCACGCTGTTGGCGTGATACCCGCCACCCAGGGCCTGCATCAATTGAATCG 351 ||| | | |||||| || ||||||||||||||||||||||||||||||| Sbjct 610 CCATGTTCCTGGCGTCGTATCCGCCACCCAGGGCCTGCATCAATTGAATCG 660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1019447684992