Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01002083.1
Length=362
Score E
Sequences producing significant alignments: (Bits) Value
seq21908 271 2e-70
seq84228 262 8e-68
>seq21908
Length=1419
Score = 271 bits (300), Expect = 2e-70
Identities = 275/358 (77%), Gaps = 0/358 (0%)
Strand=Plus/Minus
Query 5 GCCAGCGACGAGGCACGTACTCACCATTGGCGCTGTGGCAATGACATTGCCCACAGCTTG 64
||||||||||| || || || |||||||||||| ||||||||||||||||||||| ||
Sbjct 777 GCCAGCGACGAAGCCCGCACCACCCATTGGCGCTGCGGCAATGACATTGCCCACAGCCTG 718
Query 65 CAGGTAGCTGGGTTCAAGGGCCGCTTCCAGATGCTCAGCGACCCACTGTGCATGGGCCCC 124
|| | || |||||||| || | |||| ||||||| |||||| ||||||||||||||
Sbjct 717 CAACTGGCAGGGTTCAAAGGGCAGTTCCGGATGCTCGCCGACCCGCTGTGCATGGGCCCG 658
Query 125 GTACGCAATCTTCCCAGCGCCGAATTCCGCCGCCTGCGCAGCGCTTTTATCAGCCAGACT 184
|| ||| || | ||| || | |||||| ||||||||| || |||||||||||| |
Sbjct 657 GTCCGCGATTTGCCCCGCCAGGCGTTCCGCGCCCTGCGCAGTGCCTTTATCAGCCAGGCC 598
Query 185 TTTGCCTTGACCCCTGCTGATGTAAACCTGCGCGTTGACGGGGAATACACCCAATTGGAC 244
|| ||| | || |||| | | ||||| |||| ||||| ||| | |||
Sbjct 597 TTCGCCATCGATGAAGCCGATGCAGCTCGTCGCGTCGACGTTGAATATGACCACCTCGAC 538
Query 245 GCACTGGCCGGCGCCGAACATAGCGTGTTGTGGTGTGAAGCGGATGCCTATGACCAATTG 304
||| ||||| ||||||| || || ||| ||||||| |||||||||||||||||||| ||
Sbjct 537 GCATTGGCCAGCGCCGACCACAGTGTGCTGTGGTGCGAAGCGGATGCCTATGACCAGCTG 478
Query 305 TTCCTGATTCGCGCACTCTCAAGTCTTGAACGCACGCCGAAAAAACTTGAGCTGATCG 362
|||||||| ||||||||| | ||||||||| |||| | ||||| ||||| ||||
Sbjct 477 TTCCTGATCCGCGCACTCGCCGGTCTTGAACAGGTGCCGCACAAACTGGAGCTCATCG 420
>seq84228
Length=12270
Score = 262 bits (290), Expect = 8e-68
Identities = 273/358 (76%), Gaps = 0/358 (0%)
Strand=Plus/Minus
Query 5 GCCAGCGACGAGGCACGTACTCACCATTGGCGCTGTGGCAATGACATTGCCCACAGCTTG 64
||||||||||| || || || |||||||||||| ||||||||||||||||||||| ||
Sbjct 1511 GCCAGCGACGAAGCCCGCACCACCCATTGGCGCTGCGGCAATGACATTGCCCACAGCCTG 1452
Query 65 CAGGTAGCTGGGTTCAAGGGCCGCTTCCAGATGCTCAGCGACCCACTGTGCATGGGCCCC 124
||| | || |||||||| || | || | |||||||| |||||| ||||||||||||||
Sbjct 1451 CAGCTGGCGGGGTTCAAAGGACAGTTTCGGATGCTCACCGACCCGCTGTGCATGGGCCCG 1392
Query 125 GTACGCAATCTTCCCAGCGCCGAATTCCGCCGCCTGCGCAGCGCTTTTATCAGCCAGACT 184
|| ||| |||| |||||| | |||||| | ||||||||||||||||||||||| |
Sbjct 1391 GTCCGCGATCTGCCCAGCCAAGCCTTCCGCGCCATGCGCAGCGCTTTTATCAGCCAGGCC 1332
Query 185 TTTGCCTTGACCCCTGCTGATGTAAACCTGCGCGTTGACGGGGAATACACCCAATTGGAC 244
|||||| | ||||||| | || || || | |||||| ||| | ||
Sbjct 1331 TTTGCCATCGATGAAGCTGATGCGGCACGTCGTGTCGATGCTGAATACGACCACCTCGAA 1272
Query 245 GCACTGGCCGGCGCCGAACATAGCGTGTTGTGGTGTGAAGCGGATGCCTATGACCAATTG 304
|| ||||| ||||||| || || ||| ||||||| ||||||||||| ||||||||| ||
Sbjct 1271 GCCTTGGCCAGCGCCGATCACAGTGTGCTGTGGTGCGAAGCGGATGCGTATGACCAACTG 1212
Query 305 TTCCTGATTCGCGCACTCTCAAGTCTTGAACGCACGCCGAAAAAACTTGAGCTGATCG 362
|||||| |||||||||| | ||||||| | | ||| || || || |||||||
Sbjct 1211 TTCCTGGTTCGCGCACTGGCGGGTCTTGAGCAAGCACCGCGCAAGCTGGAACTGATCG 1154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1054601053440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |