Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01002083.1 Length=362 Score E Sequences producing significant alignments: (Bits) Value seq21908 271 2e-70 seq84228 262 8e-68 >seq21908 Length=1419 Score = 271 bits (300), Expect = 2e-70 Identities = 275/358 (77%), Gaps = 0/358 (0%) Strand=Plus/Minus Query 5 GCCAGCGACGAGGCACGTACTCACCATTGGCGCTGTGGCAATGACATTGCCCACAGCTTG 64 ||||||||||| || || || |||||||||||| ||||||||||||||||||||| || Sbjct 777 GCCAGCGACGAAGCCCGCACCACCCATTGGCGCTGCGGCAATGACATTGCCCACAGCCTG 718 Query 65 CAGGTAGCTGGGTTCAAGGGCCGCTTCCAGATGCTCAGCGACCCACTGTGCATGGGCCCC 124 || | || |||||||| || | |||| ||||||| |||||| |||||||||||||| Sbjct 717 CAACTGGCAGGGTTCAAAGGGCAGTTCCGGATGCTCGCCGACCCGCTGTGCATGGGCCCG 658 Query 125 GTACGCAATCTTCCCAGCGCCGAATTCCGCCGCCTGCGCAGCGCTTTTATCAGCCAGACT 184 || ||| || | ||| || | |||||| ||||||||| || |||||||||||| | Sbjct 657 GTCCGCGATTTGCCCCGCCAGGCGTTCCGCGCCCTGCGCAGTGCCTTTATCAGCCAGGCC 598 Query 185 TTTGCCTTGACCCCTGCTGATGTAAACCTGCGCGTTGACGGGGAATACACCCAATTGGAC 244 || ||| | || |||| | | ||||| |||| ||||| ||| | ||| Sbjct 597 TTCGCCATCGATGAAGCCGATGCAGCTCGTCGCGTCGACGTTGAATATGACCACCTCGAC 538 Query 245 GCACTGGCCGGCGCCGAACATAGCGTGTTGTGGTGTGAAGCGGATGCCTATGACCAATTG 304 ||| ||||| ||||||| || || ||| ||||||| |||||||||||||||||||| || Sbjct 537 GCATTGGCCAGCGCCGACCACAGTGTGCTGTGGTGCGAAGCGGATGCCTATGACCAGCTG 478 Query 305 TTCCTGATTCGCGCACTCTCAAGTCTTGAACGCACGCCGAAAAAACTTGAGCTGATCG 362 |||||||| ||||||||| | ||||||||| |||| | ||||| ||||| |||| Sbjct 477 TTCCTGATCCGCGCACTCGCCGGTCTTGAACAGGTGCCGCACAAACTGGAGCTCATCG 420 >seq84228 Length=12270 Score = 262 bits (290), Expect = 8e-68 Identities = 273/358 (76%), Gaps = 0/358 (0%) Strand=Plus/Minus Query 5 GCCAGCGACGAGGCACGTACTCACCATTGGCGCTGTGGCAATGACATTGCCCACAGCTTG 64 ||||||||||| || || || |||||||||||| ||||||||||||||||||||| || Sbjct 1511 GCCAGCGACGAAGCCCGCACCACCCATTGGCGCTGCGGCAATGACATTGCCCACAGCCTG 1452 Query 65 CAGGTAGCTGGGTTCAAGGGCCGCTTCCAGATGCTCAGCGACCCACTGTGCATGGGCCCC 124 ||| | || |||||||| || | || | |||||||| |||||| |||||||||||||| Sbjct 1451 CAGCTGGCGGGGTTCAAAGGACAGTTTCGGATGCTCACCGACCCGCTGTGCATGGGCCCG 1392 Query 125 GTACGCAATCTTCCCAGCGCCGAATTCCGCCGCCTGCGCAGCGCTTTTATCAGCCAGACT 184 || ||| |||| |||||| | |||||| | ||||||||||||||||||||||| | Sbjct 1391 GTCCGCGATCTGCCCAGCCAAGCCTTCCGCGCCATGCGCAGCGCTTTTATCAGCCAGGCC 1332 Query 185 TTTGCCTTGACCCCTGCTGATGTAAACCTGCGCGTTGACGGGGAATACACCCAATTGGAC 244 |||||| | ||||||| | || || || | |||||| ||| | || Sbjct 1331 TTTGCCATCGATGAAGCTGATGCGGCACGTCGTGTCGATGCTGAATACGACCACCTCGAA 1272 Query 245 GCACTGGCCGGCGCCGAACATAGCGTGTTGTGGTGTGAAGCGGATGCCTATGACCAATTG 304 || ||||| ||||||| || || ||| ||||||| ||||||||||| ||||||||| || Sbjct 1271 GCCTTGGCCAGCGCCGATCACAGTGTGCTGTGGTGCGAAGCGGATGCGTATGACCAACTG 1212 Query 305 TTCCTGATTCGCGCACTCTCAAGTCTTGAACGCACGCCGAAAAAACTTGAGCTGATCG 362 |||||| |||||||||| | ||||||| | | ||| || || || ||||||| Sbjct 1211 TTCCTGGTTCGCGCACTGGCGGGTCTTGAGCAAGCACCGCGCAAGCTGGAACTGATCG 1154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1054601053440