Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01002110.1
Length=382
Score E
Sequences producing significant alignments: (Bits) Value
seq82829 500 2e-139
seq76962 316 5e-84
>seq82829
Length=11751
Score = 500 bits (554), Expect = 2e-139
Identities = 340/382 (89%), Gaps = 0/382 (0%)
Strand=Plus/Minus
Query 1 CGAGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGC 60
|||| || || ||||||| |||||| ||||| ||||| | || || ||||||||||
Sbjct 5020 CGAGGGCGAAAAAGTGCAGCATGCGCTCGGCGTCCAGCTGTTTATGACGTTCCAGGTAGC 4961
Query 61 TGTCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCC 120
||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 4960 TGTCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAACCCGTCACTGCGCC 4901
Query 121 CGGCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGG 180
|||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||
Sbjct 4900 CGGCCTGGGGCATCAACGACAGGGAATAACTGACTTCGAGCATGCGCGCCAGGTTCTCGG 4841
Query 181 CGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATACTCA 240
|||| ||||||||||| |||||||| || |||||||| || ||||||| || ||||||||
Sbjct 4840 CGCGTTCCAGGTAACGGGACATCCAGTAAAGATCTGCGGCGGTTCTACTCAACATACTCA 4781
Query 241 GCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGA 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 4780 GCCCTCCACCACCCAGGTGTCCTTGGTTCCGCCGCCTTGCGACGAGTTGACGATCAACGA 4721
Query 301 GCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGA 360
|||||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||
Sbjct 4720 GCCTTCCTTCAGCGCCACGCGGGTGAGGCCGCCGGGGACCAGGCGGGTTTCCTTGCCCGA 4661
Query 361 GAGCACGAAGGGTCGCAAGTCG 382
|||||| ||||| || | ||||
Sbjct 4660 GAGCACAAAGGGCCGTAGGTCG 4639
>seq76962
Length=9529
Score = 316 bits (350), Expect = 5e-84
Identities = 300/382 (79%), Gaps = 2/382 (1%)
Strand=Plus/Plus
Query 3 AGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGCTG 62
|| ||||| |||||||||| ||| ||||| | ||| ||| || || ||||
Sbjct 9026 AGGGCAAAAAAGTGCAACAGGCGCTCGGCGTGCAGTTCGCCGTGGCGTTCGTGGTAATCC 9085
Query 63 TCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCG 122
|||||||||||| || | | || || ||| |||||||||| ||||||||| | ||||||
Sbjct 9086 TCCAGGGTGCCGGTGATCAACAGCGGCATGGCCAGTTCATGCAGGCCATCACCACGCCCG 9145
Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182
|||| ||||||| |||| |||||| ||||| || ||||||||||| ||||| || ||
Sbjct 9146 TCCTGCGGCATCAGCGACAGCGAATAGCTGACATCGAGCATGCGTGCGAGGTTTTCCGCA 9205
Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCAT--ACTCA 240
|| |||||||| ||||||||||| |||| ||| | || ||||||| || ||| |||
Sbjct 9206 CGTTCCAGGTAGCGCGACATCCAGTACAAATCCGAGGCAGTTCTACTCAACATGGCATCA 9265
Query 241 GCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGA 300
| |||| |||||||||||||| ||||| || || || || ||||||||||| ||||||||
Sbjct 9266 GTCCTCGACCACCCAGGTGTCTTTGGTGCCGCCACCCTGGGACGAGTTGACCACCAGCGA 9325
Query 301 GCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGA 360
|||||| || ||||| ||||||| ||||||||| |||| |||||||||||||| ||
Sbjct 9326 GCCTTCGCGCAATGCCACACGGGTCAGGCCACCGGGGACCACACGGGTTTCCTTGCCGGA 9385
Query 361 GAGCACGAAGGGTCGCAAGTCG 382
| |||||| || |||| ||||
Sbjct 9386 CAACACGAACGGGCGCAGGTCG 9407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1118516268800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |