Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01002110.1 Length=382 Score E Sequences producing significant alignments: (Bits) Value seq82829 500 2e-139 seq76962 316 5e-84 >seq82829 Length=11751 Score = 500 bits (554), Expect = 2e-139 Identities = 340/382 (89%), Gaps = 0/382 (0%) Strand=Plus/Minus Query 1 CGAGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGC 60 |||| || || ||||||| |||||| ||||| ||||| | || || |||||||||| Sbjct 5020 CGAGGGCGAAAAAGTGCAGCATGCGCTCGGCGTCCAGCTGTTTATGACGTTCCAGGTAGC 4961 Query 61 TGTCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCC 120 ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| Sbjct 4960 TGTCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAACCCGTCACTGCGCC 4901 Query 121 CGGCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGG 180 |||||||||||||||| |||| |||||||||||||| |||||||| ||||||||||||| Sbjct 4900 CGGCCTGGGGCATCAACGACAGGGAATAACTGACTTCGAGCATGCGCGCCAGGTTCTCGG 4841 Query 181 CGCGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCATACTCA 240 |||| ||||||||||| |||||||| || |||||||| || ||||||| || |||||||| Sbjct 4840 CGCGTTCCAGGTAACGGGACATCCAGTAAAGATCTGCGGCGGTTCTACTCAACATACTCA 4781 Query 241 GCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGA 300 |||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||| Sbjct 4780 GCCCTCCACCACCCAGGTGTCCTTGGTTCCGCCGCCTTGCGACGAGTTGACGATCAACGA 4721 Query 301 GCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGA 360 |||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||| Sbjct 4720 GCCTTCCTTCAGCGCCACGCGGGTGAGGCCGCCGGGGACCAGGCGGGTTTCCTTGCCCGA 4661 Query 361 GAGCACGAAGGGTCGCAAGTCG 382 |||||| ||||| || | |||| Sbjct 4660 GAGCACAAAGGGCCGTAGGTCG 4639 >seq76962 Length=9529 Score = 316 bits (350), Expect = 5e-84 Identities = 300/382 (79%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 3 AGCGCAAAGAAGTGCAACATGCGTTCGGCATCCAGGGTCTGGTGCCGCTCCAGGTAGCTG 62 || ||||| |||||||||| ||| ||||| | ||| ||| || || |||| Sbjct 9026 AGGGCAAAAAAGTGCAACAGGCGCTCGGCGTGCAGTTCGCCGTGGCGTTCGTGGTAATCC 9085 Query 63 TCCAGGGTGCCGCTGCTGAGCAACGACATCGCCAGTTCATCCAGGCCATCGCTGCGCCCG 122 |||||||||||| || | | || || ||| |||||||||| ||||||||| | |||||| Sbjct 9086 TCCAGGGTGCCGGTGATCAACAGCGGCATGGCCAGTTCATGCAGGCCATCACCACGCCCG 9145 Query 123 GCCTGGGGCATCAAGGACAACGAATAACTGACTTCCAGCATGCGTGCCAGGTTCTCGGCG 182 |||| ||||||| |||| |||||| ||||| || ||||||||||| ||||| || || Sbjct 9146 TCCTGCGGCATCAGCGACAGCGAATAGCTGACATCGAGCATGCGTGCGAGGTTTTCCGCA 9205 Query 183 CGCTCCAGGTAACGCGACATCCAATACAGATCTGCAGCTGTTCTACGCAGCAT--ACTCA 240 || |||||||| ||||||||||| |||| ||| | || ||||||| || ||| ||| Sbjct 9206 CGTTCCAGGTAGCGCGACATCCAGTACAAATCCGAGGCAGTTCTACTCAACATGGCATCA 9265 Query 241 GCCCTCCACCACCCAGGTGTCCTTGGTTCCACCGCCTTGCGACGAGTTGACGACCAGCGA 300 | |||| |||||||||||||| ||||| || || || || ||||||||||| |||||||| Sbjct 9266 GTCCTCGACCACCCAGGTGTCTTTGGTGCCGCCACCCTGGGACGAGTTGACCACCAGCGA 9325 Query 301 GCCTTCCTTCAGCGCCACGCGGGTCAAGCCACCGGGCACCAGGCGGGTTTCCTTGCCCGA 360 |||||| || ||||| ||||||| ||||||||| |||| |||||||||||||| || Sbjct 9326 GCCTTCGCGCAATGCCACACGGGTCAGGCCACCGGGGACCACACGGGTTTCCTTGCCGGA 9385 Query 361 GAGCACGAAGGGTCGCAAGTCG 382 | |||||| || |||| |||| Sbjct 9386 CAACACGAACGGGCGCAGGTCG 9407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1118516268800