Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01002120.1
Length=347
Score E
Sequences producing significant alignments: (Bits) Value
seq71011 361 1e-97
seq3507 185 2e-44
>seq71011
Length=7245
Score = 361 bits (400), Expect = 1e-97
Identities = 262/301 (87%), Gaps = 4/301 (1%)
Strand=Plus/Plus
Query 49 TTCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATC 108
||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||| | ||
Sbjct 850 TTCACCGTGGTTGCCTTCGGCGTTGTTGAGGCCAAACAGGCGCTCCTTGAGGATCGCGTC 909
Query 109 GCGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGC 168
|| |||||||||||||||||||||| |||||| ||||| | |||||| ||||| || ||
Sbjct 910 ACGTTCGTTCCACAGGGCCAGGCCCAAGCACCAGCGTTGGGACTTGTCGCTGAAACCGGC 969
Query 169 CAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGGC 228
| || ||||||||||| || ||||||||||||||||| || ||||||||||||||||
Sbjct 970 TAAACCATCCTCGCCCCAGCGATAGGCGCGGCTGCGTGCGTGTTCATGGGGGAAGTAGGT 1029
Query 229 CCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCAG 288
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 1030 CCAGGCGTCACCATCGGCGCTGTAGTCTTCGCGCACTGTGCCCCATTGGCGTTCACTTAA 1089
Query 289 GTAGGGGCCCCACTCGCGCCAGCGCTCGGCGTC--GCTGGTTGCCAGGCGTTGGCCTTCG 346
|| ||||||||||||||||||| |||||| || |||| ||||||||||||||||||
Sbjct 1090 ATAAGGGCCCCACTCGCGCCAGCACTCGGCATCCGGCTG--CGCCAGGCGTTGGCCTTCG 1147
Query 347 A 347
|
Sbjct 1148 A 1148
>seq3507
Length=1040
Score = 185 bits (204), Expect = 2e-44
Identities = 200/263 (76%), Gaps = 4/263 (2%)
Strand=Plus/Minus
Query 50 TCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATCG 109
|| ||||||||||| || ||| |||||||||||||||| ||||||| ||| ||
Sbjct 755 TCGCCGTGGTTGCCTTCCTGATTGGTCAGGCCGAACAGGCGTTCCTTGAGGATCGGGTCC 696
Query 110 CGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGC--CTTGTCACTGAACCCCG 167
||| ||||||||||||| ||| ||||||||| ||| | | ||| | ||| ||
Sbjct 695 CGCCCGTTCCACAGGGCGAGGGACAGGCACCA--GTTCAGATGCCGGTCGCCGAAGCCGC 638
Query 168 CCAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGG 227
| | |||||||||||||| |||||||||||| || || ||||| ||||| | ||||
Sbjct 637 CGATCCCGTCCTCGCCCCAGCGGTAGGCGCGGGATCGGGCGTGGTCGTGGGGCAGGTAGT 578
Query 228 CCCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCA 287
||||||||||||| | | ||| || || || ||||| ||||||||||| || ||||| |
Sbjct 577 CCCAGGCGTCGCCGCCCGGGCTATAATCCTCCCGCACGGTGCCCCATTGCCGGTCGCTGA 518
Query 288 GGTAGGGGCCCCACTCGCGCCAG 310
| || || ||||| |||||||
Sbjct 517 GATACGGCCCCCAGCGGCGCCAG 495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1006664641920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |