Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01002120.1 Length=347 Score E Sequences producing significant alignments: (Bits) Value seq71011 361 1e-97 seq3507 185 2e-44 >seq71011 Length=7245 Score = 361 bits (400), Expect = 1e-97 Identities = 262/301 (87%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 49 TTCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATC 108 ||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||| | || Sbjct 850 TTCACCGTGGTTGCCTTCGGCGTTGTTGAGGCCAAACAGGCGCTCCTTGAGGATCGCGTC 909 Query 109 GCGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGC 168 || |||||||||||||||||||||| |||||| ||||| | |||||| ||||| || || Sbjct 910 ACGTTCGTTCCACAGGGCCAGGCCCAAGCACCAGCGTTGGGACTTGTCGCTGAAACCGGC 969 Query 169 CAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGGC 228 | || ||||||||||| || ||||||||||||||||| || |||||||||||||||| Sbjct 970 TAAACCATCCTCGCCCCAGCGATAGGCGCGGCTGCGTGCGTGTTCATGGGGGAAGTAGGT 1029 Query 229 CCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCAG 288 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || | Sbjct 1030 CCAGGCGTCACCATCGGCGCTGTAGTCTTCGCGCACTGTGCCCCATTGGCGTTCACTTAA 1089 Query 289 GTAGGGGCCCCACTCGCGCCAGCGCTCGGCGTC--GCTGGTTGCCAGGCGTTGGCCTTCG 346 || ||||||||||||||||||| |||||| || |||| |||||||||||||||||| Sbjct 1090 ATAAGGGCCCCACTCGCGCCAGCACTCGGCATCCGGCTG--CGCCAGGCGTTGGCCTTCG 1147 Query 347 A 347 | Sbjct 1148 A 1148 >seq3507 Length=1040 Score = 185 bits (204), Expect = 2e-44 Identities = 200/263 (76%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 50 TCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATCG 109 || ||||||||||| || ||| |||||||||||||||| ||||||| ||| || Sbjct 755 TCGCCGTGGTTGCCTTCCTGATTGGTCAGGCCGAACAGGCGTTCCTTGAGGATCGGGTCC 696 Query 110 CGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGC--CTTGTCACTGAACCCCG 167 ||| ||||||||||||| ||| ||||||||| ||| | | ||| | ||| || Sbjct 695 CGCCCGTTCCACAGGGCGAGGGACAGGCACCA--GTTCAGATGCCGGTCGCCGAAGCCGC 638 Query 168 CCAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGG 227 | | |||||||||||||| |||||||||||| || || ||||| ||||| | |||| Sbjct 637 CGATCCCGTCCTCGCCCCAGCGGTAGGCGCGGGATCGGGCGTGGTCGTGGGGCAGGTAGT 578 Query 228 CCCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCA 287 ||||||||||||| | | ||| || || || ||||| ||||||||||| || ||||| | Sbjct 577 CCCAGGCGTCGCCGCCCGGGCTATAATCCTCCCGCACGGTGCCCCATTGCCGGTCGCTGA 518 Query 288 GGTAGGGGCCCCACTCGCGCCAG 310 | || || ||||| ||||||| Sbjct 517 GATACGGCCCCCAGCGGCGCCAG 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1006664641920