Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01002172.1 Length=233 Score E Sequences producing significant alignments: (Bits) Value seq102228 367 2e-99 >seq102228 Length=21998 Score = 367 bits (406), Expect = 2e-99 Identities = 221/233 (95%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 1 TCGAGTGGTCAAGCCGACCTTCGTGCGCCATGGCAAAACCTTGATCTAATCTATTTCCGG 60 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 5426 TCGAGTGGTCAAACCGACCTTCGTGCGCCATGGCAAAACCTTGATCTAACCTATTTCCGG 5485 Query 61 CAGGCCAATGGCCGCTGACATTACTTCTTGAGGACACAGACTATGAGCGATATCCCTGCC 120 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 5486 CAGGCCAATGGCCGCTGACATTACTTCTTGAGGACACAGATTATGAGCGATATCCCTGCC 5545 Query 121 GACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCTGACGGCACCGTGACC 180 |||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| Sbjct 5546 GACCTGCGTTTTGCCGAAAGCCACGAATGGGCACGCCTGGAAGCTGACGGCACCGTGACC 5605 Query 181 GTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTGATTGTCGA 233 || ||||| ||||||||||| |||||||||||||| ||||||||| |||| || Sbjct 5606 GTCGGTATTTCCGACCATGCTCAGGAAGCGTTGGGTGATGTGGTGTTTGTTGA 5658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 645570435288