Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq131474 493 2e-137 seq130631 313 5e-83 seq125715 313 5e-83 seq111469 313 5e-83 seq108251 185 2e-44 seq131001 165 2e-38 >seq131474 Length=103143 Score = 493 bits (546), Expect = 2e-137 Identities = 297/310 (96%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45560 GAACGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 45501 Query 80 AGGGACTATCG-GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||||| ||| | ||| | |||||||||||||||||||||||||||||||||||| Sbjct 45500 AGGGACTATCGCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 45442 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 45441 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATTTCCTTAGCC 45382 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45381 GAAAGGTTTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 45322 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 45321 GCTCTTCAACGAGGAATGCCTAGTAAGCGCATGTCATCAGCATGCGTTGATTACGTCCCT 45262 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 45261 GCCCTTTGTA 45252 Score = 300 bits (332), Expect = 3e-79 Identities = 257/313 (82%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC--GCTTTGGCGGGTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | ||| | ||| ||||||| Sbjct 36995 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGATTTCCTCCGCGGCCAGCTTCTT 36936 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 36935 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 36877 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 36876 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 36817 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 36816 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 36758 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| |||||||||||| ||||||||| ||||| || ||| || Sbjct 36757 GTTGGTCTTCAACGAGGAATTTCTAGTAAGCGCGAGTCATCAGCTCGCGTCGACTACATC 36698 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 36697 CCTGCCCTTTGTA 36685 Score = 288 bits (318), Expect = 2e-75 Identities = 252/309 (82%), Gaps = 6/309 (2%) Strand=Plus/Minus Query 24 GAGACCTTAACCTGCTAAATAGCCAGGCCC--GCTTTGGCGGGTCGCCGGCTTCTTAGAG 81 |||||||||||||||||| |||| | || | || || ||| |||||||||| Sbjct 69635 GAGACCTTAACCTGCTAACTAGCTATGCAAAGGATTCCCTTCGTGGCCAACTTCTTAGAG 69576 Query 82 GGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 ||||||| | ||| | | | | ||||||||||||||||||||||| ||||||||||||| Sbjct 69575 GGACTATGGCTGCTTAGGACAA-GGAAGTTTGAGGCAATAACAGGTATGTGATGCCCTTA 69517 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||| ||||||| ||||||||| | ||| ||| || ||||||||| Sbjct 69516 GATGTTCTGGGCCACACGCGCACTACACTGATGTATTAAACAAGTCTATAGCCTTGGCCG 69457 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| ||| Sbjct 69456 ACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTG 69398 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||||| Sbjct 69397 GTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTG 69338 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 69337 CCCTTTGTA 69329 Score = 165 bits (182), Expect = 2e-38 Identities = 120/138 (87%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||| Sbjct 34778 CCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTG 34720 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| | Sbjct 34719 CAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACT 34660 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 34659 ACGTCCCTGCCCTTTGTA 34642 >seq130631 Length=123029 Score = 313 bits (346), Expect = 5e-83 Identities = 260/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC--GCTTTGGCGGGTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | ||| | ||| ||||||| Sbjct 101435 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGATTTCCTCCGCGGCCAGCTTCTT 101376 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 101375 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 101317 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 101316 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 101257 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 101256 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 101198 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 101197 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 101138 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 101137 CCTGCCCTTTGTA 101125 Score = 313 bits (346), Expect = 5e-83 Identities = 260/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC--GCTTTGGCGGGTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | ||| | ||| ||||||| Sbjct 105209 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGATTTCCTCCGCGGCCAGCTTCTT 105150 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 105149 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 105091 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 105090 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 105031 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 105030 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 104972 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 104971 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 104912 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 104911 CCTGCCCTTTGTA 104899 Score = 228 bits (252), Expect = 2e-57 Identities = 187/226 (83%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 50902 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGTGCGC 50843 Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 |||||||| | ||| |||| || |||| || | | | | |||||||||| | || Sbjct 50842 TACACTGATGTATTCAATGAGTCTATAGCCTTAGCTGACACGCCCGGGTAATCTT-TGAA 50784 Query 223 ACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282 | | |||| |||||||||| ||||| |||| ||| ||||||||||||||| |||||| Sbjct 50783 ATTTAATCGTAATGGGGATAGATCATTGAAATTGTTGGTCTTCAACGAGGAATTCCTAGT 50724 Query 283 AAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| | ||||||| | ||||||||| |||||| ||||||||| Sbjct 50723 AAGCGTGGGTCATCAACTTACGTTGATTATGTCCCTACCCTTTGTA 50678 Score = 187 bits (206), Expect = 5e-45 Identities = 199/261 (76%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAG-GCAATAACAGGTCTGTG 130 |||||||||||||| | |||| | || | | | | || ||||||||||||||||| Sbjct 91762 CTTCTTAGAGGGACAAGCGGCGCTCGCAGCCGCACGAAACAGAGCAATAACAGGTCTGTG 91703 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA--- 187 |||||||||||||| | |||||||||||| |||||||||| | || || | | Sbjct 91702 ATGCCCTTAGATGTCCGGGGCCGCACGCGTGCTACACTGAAGTGGTCATCGTGCATACTG 91643 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 | ||| ||| |||| ||||||| | | || | | ||||| ||||||| | ||| Sbjct 91642 TTTCCTGCTCCGAAAGGAGTGGGTAACCGCTTGAACCCATTTCGTGATGGGGATTGGGCA 91583 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| ||||||||| | | |||||||||| || |||||||| | ||||| ||| |||||| Sbjct 91582 TTGTAATTATTGCCCATGAACGAGGAATTCCCAGTAAGCGTGAGTCATTAGCTTGCGTTG 91523 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 91522 ATTACGTCCCTGCCCTTTGTA 91502 >seq125715 Length=54709 Score = 313 bits (346), Expect = 5e-83 Identities = 260/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC--GCTTTGGCGGGTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | ||| | ||| ||||||| Sbjct 20950 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGATTTCCTCCGCGGCCAGCTTCTT 20891 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 20890 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 20832 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 20831 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 20772 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 20771 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 20713 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 20712 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 20653 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 20652 CCTGCCCTTTGTA 20640 >seq111469 Length=30026 Score = 313 bits (346), Expect = 5e-83 Identities = 260/313 (83%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC--GCTTTGGCGGGTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | ||| | ||| ||||||| Sbjct 10708 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGATTTCCTCCGCGGCCAGCTTCTT 10649 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 10648 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 10590 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 10589 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 10530 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 10529 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATT 10471 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||| Sbjct 10470 GTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTC 10411 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 10410 CCTGCCCTTTGTA 10398 >seq108251 Length=27153 Score = 185 bits (204), Expect = 2e-44 Identities = 180/227 (79%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCC--GCTTTGGCGGGTCGCCGGCTTCTT 77 || |||||||| | |||||||| |||| | || | ||| | ||| ||||||| Sbjct 23889 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGATTTCCTCCGCGGCCAGCTTCTT 23830 Query 78 AGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 ||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||||||| Sbjct 23829 AGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 23771 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 ||||||||||||||||||||||||||||||||||| | |||||||| || ||||| Sbjct 23770 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTG 23711 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATA 242 |||| ||| | |||||||||| | ||| | ||||| ||||| || Sbjct 23710 GCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGTTA 23665 >seq131001 Length=88751 Score = 165 bits (182), Expect = 2e-38 Identities = 195/259 (75%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| ||||| | || || | | |||| |||||||||||| |||| ||| Sbjct 13074 GCTTCTTAGAGG-ACTATGGTTTCTTAGGCCAAGGAAACTTGAGGCAATAATAGGTATGT 13132 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||||||||||||||| | |||| ||||| | ||| |||| || Sbjct 13133 GATGCCCTTAGATGTTCTGGGCCGCATGTATGCTATACTGATGTATTCAATGAGTCTATA 13192 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||| | | | | || |||| | ||| | ||| | ||||||||| |||| Sbjct 13193 GCCTTGGCCGCTAAGCCCAGATAGTCTT-TGAAATTTCATCGCGATGGGGATAGTTCATT 13251 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||| ||| ||||||| |||||| ||| ||| ||| | |||||| || | | |||| Sbjct 13252 ACAATTGTTGGTCTTCAAAGAGGAAATCCTTGTAGGCGTGAGTCATCCGCTCACATTGAC 13311 Query 310 TACGTCCCTGCCCTTTGTA 328 || || |||||| |||||| Sbjct 13312 TATGT-CCTGCCATTTGTA 13329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945945187328