Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01002205.1 Length=300 Score E Sequences producing significant alignments: (Bits) Value seq70371 452 7e-125 >seq70371 Length=7021 Score = 452 bits (500), Expect = 7e-125 Identities = 267/277 (96%), Gaps = 1/277 (0%) Strand=Plus/Minus Query 24 TTCGATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGAAGGTCCATGTGCACGTCGGC 83 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 4825 TTCGATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGATGGTCCATGTGCATGTCGGC 4766 Query 84 AAGAATATTCGGCCACCGCAAGAGGATGGGTGACATACGCCTCGCCACTACGTCGGCGTT 143 ||||||||| | ||||||||||||||||||||||||||||||| || ||||| ||||||| Sbjct 4765 AAGAATATTTG-CCACCGCAAGAGGATGGGTGACATACGCCTCACCGCTACGCCGGCGTT 4707 Query 144 GGCCGTCGTGGGCTTGTTCGGCGTAGAAATACGCTCGGCGAACCAGGTTGACCTGGTCTG 203 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 4706 GGCCGTCGTGGGCTTGTTCGGCGTAGAAATACGCTCGGCGGACCAGGTTGACCTGGTCTG 4647 Query 204 CGCCGAGGTAGGCCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAAAGTGTGAACTC 263 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4646 GGCCGAGGTAGGCCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAAAGTGTGAACTC 4587 Query 264 CTGCCGATGGCTGTGACCCCGCGCCGTGCTACGTCGA 300 |||||| |||||||||||||||||||||||||||||| Sbjct 4586 CTGCCGTTGGCTGTGACCCCGCGCCGTGCTACGTCGA 4550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 856463885824