Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq131474 284 2e-74 seq581 255 1e-65 seq125899 242 6e-62 seq45966 125 1e-26 seq130631 107 3e-21 seq127193 107 3e-21 seq107718 107 3e-21 seq65048 98.7 2e-18 >seq131474 Length=103143 Score = 284 bits (314), Expect = 2e-74 Identities = 233/278 (84%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||||||| |||||| ||||||||||||||||||||| |||| |||||| Sbjct 41460 GTACGAGAGGAACCGCGGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 41403 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| Sbjct 41402 GCCGCGAAGCTACCATCTGCTGGATAATAGCTGAACGCCTCTAAGTTAGAATCCATGCCA 41343 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||||| |||| ||||| |||| ||||| |||||||||||||||||||||||| || Sbjct 41342 GAACGGGACGATTTTCTCCAGCACGTCGTACGAGGATACGAATAGGCTTCGGCCCCGGAC 41283 Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240 ||||||||||| ||| | || |||| | | | | | |||||||| ||| Sbjct 41282 CTTAGCAGGCC-ATAACTCCTCTTTCGTAGAAGTCGGAAGAGGT-AATTGGCGGATAGCA 41225 Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 |||| || |||| ||||| ||||||||||||||||| Sbjct 41224 ATTTGACAGCGCGCTGGGATGAATCCTTTGCAGACGAC 41187 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 28931 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 28874 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 28873 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 28814 Query 121 GAA 123 ||| Sbjct 28813 GAA 28811 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 53497 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 53440 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 53439 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 53380 Query 121 GAA 123 ||| Sbjct 53379 GAA 53377 Score = 80.6 bits (88), Expect = 4e-13 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||||| || | || | ||||||| | || || ||| || |||| Sbjct 73829 GTATGAGAGGAACCGTTGACT-CACAC-AATTGGTCATCGCACTTGGTTGAAAAGCCAGT 73772 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || ||||||||| | |||||||||| |||||||||||| ||||||||||| || | Sbjct 73771 GGCGTGAAGCTACCGTGCACTGGATTATGAATGAACGCCTCTATGTCAGAATCCACGCTA 73712 Query 121 GAA 123 ||| Sbjct 73711 GAA 73709 Score = 80.6 bits (88), Expect = 4e-13 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| ||||| | || ||| | | ||||||| | || || ||| || |||| Sbjct 75950 GTACGATAGGAATTGTTGA-TTC-GCACAATTGGTAATCGCACTTGGTTGAAAAGCCAGT 75893 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | || ||||||||||| | ||||||||| ||||| |||||||||||||||||| || | Sbjct 75892 GGCGAGAAGCTACCATGCGTTGGATTATGACTGAATGCCTCTAAGTCAGAATCCGGGCTA 75833 Query 121 GAA 123 ||| Sbjct 75832 GAA 75830 >seq581 Length=1006 Score = 255 bits (282), Expect = 1e-65 Identities = 193/225 (86%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 55 GGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1006 GGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 947 Query 115 ATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGC 173 |||||||| ||| |||| | ||| ||||||||||||||||||||||||| ||| ||| Sbjct 946 GTGCCAGAAAGGGACGATTTCCCCCTACACATCGTAGTCGGATACGAATAGGCCTTTGGC 887 Query 174 CCCGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCG 233 || ||||||||||||| ||| || ||| | | |||| | ||| | ||||| || Sbjct 886 CCTGAACCTTAGCAGGTTGGCGACCGGCTCCAGGTAGAAGTCCTGGG-GTCGAGCTGACG 828 Query 234 GATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 827 AATTGCAATTTCACAATGCGTAGGGATAAATCCTTTGCAGACGAC 783 >seq125899 Length=55411 Score = 242 bits (268), Expect = 6e-62 Identities = 227/282 (80%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||||| Sbjct 30333 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 30390 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 30391 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 30450 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | ||| ||| | |||||||||||||| | Sbjct 30451 GAACGCGGTGATAC-CACCCGCACGT-ATAGATGGACAAGAATAGGCTTCGGCTTAGCGT 30508 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236 |||||||||| | | |||| || |||||||| | | | | | ||| || Sbjct 30509 CTTAGCAGGCGATTCTTCCACGGCGCTC-----GAAGCGCGTCGTGGT-ATTTCGCGTAT 30562 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||||| || | || ||| |||||||||||||||||| Sbjct 30563 TGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 30604 >seq45966 Length=2893 Score = 125 bits (138), Expect = 1e-26 Identities = 133/170 (78%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | ||| || |||||||| ||||| ||||| || | |||| | Sbjct 2804 GTACGAGAGGAACTGCTCA-TTCGGA-TAATTGGTATTTGCACCTGTCCGATCGGGCAAT 2747 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||| |||| ||| |||||||||||||||||||||||||||||||| | | | Sbjct 2746 GGTGCGAAGCTATCATCCGCTAGATTATGGCTGAACGCCTCTAAGTCAGAATCCGTACTA 2687 Query 121 GAACGGGGTGAT-TCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTT 169 ||| | |||| | ||| |||||| |||||| | ||||||||| Sbjct 2686 GAA-ACGATGATGTTGGTCCCGCACATGTTAGTCGAGTTATAATAGGCTT 2638 >seq130631 Length=123029 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 97198 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 97141 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 97140 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 97081 Query 121 GAA 123 ||| Sbjct 97080 GAA 97078 Score = 89.7 bits (98), Expect = 8e-16 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| ||||| || || |||| | ||||||| | || || ||| || |||| Sbjct 46602 GTACGATAGGAATCGTTGA-TTCACAC-AATTGGTAATCGCACTTGGTTGAAAAGCCAGT 46545 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| | ||||||||| ||||| |||| |||||||||||||| || | Sbjct 46544 GGCGCGAAGCTACCATTCGTTGGATTATGACTGAATGCCTTTAAGTCAGAATCCAGGCTA 46485 Query 121 GAA 123 ||| Sbjct 46484 GAA 46482 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || ||| ||| || | ||| |||| ||| | Sbjct 86486 GTACGAGAGGAACCGCAGG-TTCGGACAAAT-GGTACATGTGCCTGCTCGACCGAGCAAT 86429 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | ||| |||| | || | |||||||| |||||||||||||||||||||||| Sbjct 86428 GGCACGACGCTATCGTCCGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 86375 >seq127193 Length=60659 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 8726 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 8783 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 8784 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 8843 Query 121 GAA 123 ||| Sbjct 8844 GAA 8846 >seq107718 Length=26442 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 21187 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 21244 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 21245 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 21304 Query 121 GAA 123 ||| Sbjct 21305 GAA 21307 >seq65048 Length=5430 Score = 98.7 bits (108), Expect = 2e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 3480 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 3537 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||| | ||||||||||| |||||||||||||| |||||||| Sbjct 3538 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAATCAGAATC 3590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818148670464