Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq131474 284 2e-74
seq581 255 1e-65
seq125899 242 6e-62
seq45966 125 1e-26
seq130631 107 3e-21
seq127193 107 3e-21
seq107718 107 3e-21
seq65048 98.7 2e-18
>seq131474
Length=103143
Score = 284 bits (314), Expect = 2e-74
Identities = 233/278 (84%), Gaps = 4/278 (1%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||||||| |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 41460 GTACGAGAGGAACCGCGGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 41403
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 41402 GCCGCGAAGCTACCATCTGCTGGATAATAGCTGAACGCCTCTAAGTTAGAATCCATGCCA 41343
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||||| |||| ||||| |||| ||||| |||||||||||||||||||||||| ||
Sbjct 41342 GAACGGGACGATTTTCTCCAGCACGTCGTACGAGGATACGAATAGGCTTCGGCCCCGGAC 41283
Query 181 CTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGCA 240
||||||||||| ||| | || |||| | | | | | |||||||| |||
Sbjct 41282 CTTAGCAGGCC-ATAACTCCTCTTTCGTAGAAGTCGGAAGAGGT-AATTGGCGGATAGCA 41225
Query 241 ATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|||| || |||| ||||| |||||||||||||||||
Sbjct 41224 ATTTGACAGCGCGCTGGGATGAATCCTTTGCAGACGAC 41187
Score = 107 bits (118), Expect = 3e-21
Identities = 99/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 28931 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 28874
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 28873 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 28814
Query 121 GAA 123
|||
Sbjct 28813 GAA 28811
Score = 107 bits (118), Expect = 3e-21
Identities = 99/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 53497 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 53440
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 53439 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 53380
Query 121 GAA 123
|||
Sbjct 53379 GAA 53377
Score = 80.6 bits (88), Expect = 4e-13
Identities = 93/123 (76%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||||| || | || | ||||||| | || || ||| || ||||
Sbjct 73829 GTATGAGAGGAACCGTTGACT-CACAC-AATTGGTCATCGCACTTGGTTGAAAAGCCAGT 73772
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| || ||||||||| | |||||||||| |||||||||||| ||||||||||| || |
Sbjct 73771 GGCGTGAAGCTACCGTGCACTGGATTATGAATGAACGCCTCTATGTCAGAATCCACGCTA 73712
Query 121 GAA 123
|||
Sbjct 73711 GAA 73709
Score = 80.6 bits (88), Expect = 4e-13
Identities = 93/123 (76%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||| ||||| | || ||| | | ||||||| | || || ||| || ||||
Sbjct 75950 GTACGATAGGAATTGTTGA-TTC-GCACAATTGGTAATCGCACTTGGTTGAAAAGCCAGT 75893
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| || ||||||||||| | ||||||||| ||||| |||||||||||||||||| || |
Sbjct 75892 GGCGAGAAGCTACCATGCGTTGGATTATGACTGAATGCCTCTAAGTCAGAATCCGGGCTA 75833
Query 121 GAA 123
|||
Sbjct 75832 GAA 75830
>seq581
Length=1006
Score = 255 bits (282), Expect = 1e-65
Identities = 193/225 (86%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 55 GGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 947
Query 115 ATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG-CTTCGGC 173
|||||||| ||| |||| | ||| ||||||||||||||||||||||||| ||| |||
Sbjct 946 GTGCCAGAAAGGGACGATTTCCCCCTACACATCGTAGTCGGATACGAATAGGCCTTTGGC 887
Query 174 CCCGAACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCG 233
|| ||||||||||||| ||| || ||| | | |||| | ||| | ||||| ||
Sbjct 886 CCTGAACCTTAGCAGGTTGGCGACCGGCTCCAGGTAGAAGTCCTGGG-GTCGAGCTGACG 828
Query 234 GATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 827 AATTGCAATTTCACAATGCGTAGGGATAAATCCTTTGCAGACGAC 783
>seq125899
Length=55411
Score = 242 bits (268), Expect = 6e-62
Identities = 227/282 (80%), Gaps = 14/282 (5%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || |||||| ||||||||||||||||||||| |||| ||||||
Sbjct 30333 GTACGAGAGGAACCGCTGA-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 30390
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 30391 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 30450
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | | || |||| | ||| ||| | |||||||||||||| |
Sbjct 30451 GAACGCGGTGATAC-CACCCGCACGT-ATAGATGGACAAGAATAGGCTTCGGCTTAGCGT 30508
Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236
|||||||||| | | |||| || |||||||| | | | | | ||| ||
Sbjct 30509 CTTAGCAGGCGATTCTTCCACGGCGCTC-----GAAGCGCGTCGTGGT-ATTTCGCGTAT 30562
Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|| ||||||| || | || ||| ||||||||||||||||||
Sbjct 30563 TGTAATTTCAACACGAGCGGGGTCAAATCCTTTGCAGACGAC 30604
>seq45966
Length=2893
Score = 125 bits (138), Expect = 1e-26
Identities = 133/170 (78%), Gaps = 4/170 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| || | ||| || |||||||| ||||| ||||| || | |||| |
Sbjct 2804 GTACGAGAGGAACTGCTCA-TTCGGA-TAATTGGTATTTGCACCTGTCCGATCGGGCAAT 2747
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| ||||||||| |||| ||| |||||||||||||||||||||||||||||||| | | |
Sbjct 2746 GGTGCGAAGCTATCATCCGCTAGATTATGGCTGAACGCCTCTAAGTCAGAATCCGTACTA 2687
Query 121 GAACGGGGTGAT-TCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTT 169
||| | |||| | ||| |||||| |||||| | |||||||||
Sbjct 2686 GAA-ACGATGATGTTGGTCCCGCACATGTTAGTCGAGTTATAATAGGCTT 2638
>seq130631
Length=123029
Score = 107 bits (118), Expect = 3e-21
Identities = 99/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 97198 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 97141
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 97140 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 97081
Query 121 GAA 123
|||
Sbjct 97080 GAA 97078
Score = 89.7 bits (98), Expect = 8e-16
Identities = 95/123 (77%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||| ||||| || || |||| | ||||||| | || || ||| || ||||
Sbjct 46602 GTACGATAGGAATCGTTGA-TTCACAC-AATTGGTAATCGCACTTGGTTGAAAAGCCAGT 46545
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||||| | ||||||||| ||||| |||| |||||||||||||| || |
Sbjct 46544 GGCGCGAAGCTACCATTCGTTGGATTATGACTGAATGCCTTTAAGTCAGAATCCAGGCTA 46485
Query 121 GAA 123
|||
Sbjct 46484 GAA 46482
Score = 77.0 bits (84), Expect = 5e-12
Identities = 87/114 (76%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | ||| || ||| ||| || | ||| |||| ||| |
Sbjct 86486 GTACGAGAGGAACCGCAGG-TTCGGACAAAT-GGTACATGTGCCTGCTCGACCGAGCAAT 86429
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| | ||| |||| | || | |||||||| ||||||||||||||||||||||||
Sbjct 86428 GGCACGACGCTATCGTCCGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 86375
>seq127193
Length=60659
Score = 107 bits (118), Expect = 3e-21
Identities = 99/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 8726 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 8783
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 8784 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 8843
Query 121 GAA 123
|||
Sbjct 8844 GAA 8846
>seq107718
Length=26442
Score = 107 bits (118), Expect = 3e-21
Identities = 99/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 21187 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 21244
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 21245 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 21304
Query 121 GAA 123
|||
Sbjct 21305 GAA 21307
>seq65048
Length=5430
Score = 98.7 bits (108), Expect = 2e-18
Identities = 91/113 (81%), Gaps = 2/113 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 3480 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 3537
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
| |||||||||||| | ||||||||||| |||||||||||||| ||||||||
Sbjct 3538 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAATCAGAATC 3590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 818148670464
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