Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq26725 120 1e-22 >seq26725 Length=1775 Score = 120 bits (132), Expect = 1e-22 Identities = 462/716 (65%), Gaps = 16/716 (2%) Strand=Plus/Minus Query 38657 TCTGGTTAGCTTTCGGCAACCCGACGCGTAATACCGGGCGTTTTCGTGAATGCTTCCGGC 38716 ||||||| | ||||||||||| || || | ||||| || || ||||| |||| || Sbjct 1082 TCTGGTTCGTCTTCGGCAACCCCACCCGGACCACCGGCCGCTTCCGTGAGTGCTGGCGCA 1023 Query 38717 GTTACCG--ATCGCAGTGGGTCACGCGTCAAATTGATAGCCGCAGCGTGGAAGGGATTAA 38774 | ||| ||||| ||| || ||||| || || |||||| | | || || Sbjct 1022 AGTTCCGCCATCGC--TGGAAGACCCGTCAGATCGACAGCCGCCAGGCCAAGATGACGAA 965 Query 38775 CACCGAGCAAATTGCGGCATGGGAAAAGGAATACGGCGAGGACAGCGACTTTTTTAAGGT 38834 || || | || | |||| || |||||||| || |||||| || ||||| Sbjct 964 CAAGGACCTGATCAAGCAGTGGGCTGCCGACTACGGCGAAGAGTCCGACTTCTTCAAGGT 905 Query 38835 TCGTGTACGCGGTATTTTCCCTGACGCTTCAGAAATGCAGTTTATTCCTACCGGGTTGAC 38894 ||| || || || | ||||| || || || ||||||| || || || |||| Sbjct 904 TCGCGTGCGTGGCCTGTTCCCGTCTGCGTCTGACCTGCAGTTCATCGGTAGCGATCTGAC 845 Query 38895 GGAAGAGGCGTTGAAACGCGAGGTGACGGAAAGGGAGGTCGCGCATGCGCCGGT--TCCT 38952 || | | || | ||| |||||| || |||| |||||||| | || | Sbjct 844 TGACGCCGGCATGGATCGCACGGTGACCGAGGCCATGGTCAGCCATGCGCCAATCATCAT 785 Query 38953 CGGTGTTGACCCGGCGTATTCCGGGGCGGATGACGCAGTGATCTATTTGCGGCAGGGGCT 39012 ||| || || || | | ||||| | |||||| | |||||| |||| ||||| || Sbjct 784 CGGCGTGGATCCATCCTGGTCCGGTGAGGATGAGTTCGCGATCTACCTGCGCCAGGGCCT 725 Query 39013 TCATTGCAAATTGCTGTGG-CGAGGCAGTAAAACCACCGACGATCTGATTATGGCAAAAC 39071 || |||| || | | | ||| | | | || ||||| || | ||||| | Sbjct 724 GCACAGCAAGCTGATCGGCACCTATCAGAAGAGCGAC-GACGACGTGCTCATGGCCGGTC 666 Query 39072 GCGTCGCGGATTTTGAAGACCAGTATCACGCCGATGCGGTGTTTATCGATTTCGGCTACG 39131 | || || | | || |||||||| | || || || ||||| |||| || ||||||| Sbjct 665 GGATCTCGCAGCTGGAGGACCAGTACAAGGCTGACGCTGTGTTCGTCGACTTTGGCTACG 606 Query 39132 GCACGGGCCTGAAATCCGTC-GCAGGCGGCTGGGGTCGGTCGTGGACACTGGTGCCCTTC 39190 |||| ||| | ||| | | || | | ||||| | |||||| ||||| | ||| Sbjct 605 GCACCGGCATCGTATCGGCCGGCCGAGCGATGGGG-AGACAGTGGACGCTGGTCCAGTTC 547 Query 39191 GGCGGGGCCTCGAGCGATCTGCAAATGCTCAACAAACGCGGAGAAATGTACAACAGCGCG 39250 || || || || | ||||| | ||||| ||||| ||||| || || | ||| | | Sbjct 546 GGTGGTGCTTCAACCGATCCGGCCATGCTGAACAAGCGCGGCGAGATCTGGAACGCCATG 487 Query 39251 AAAACGTGGCTCAAGGAGGGCGGCGCGCTG---GATAGGCAGGAAACGGCGGAAGATTTG 39307 || |||||||||| ||||| | |||| || ||||| || || || || | Sbjct 486 AAGGAATGGCTCAAGGCTGGCGGTGAGCTGAACGACCGGCAG---ACCGCTGATGAGATC 430 Query 39308 TCGGCCTGTGAGTACAGGGTGCGCGTCGATGGCCGGATTGTGTTGGAAGACAAGGA 39363 | ||| |||||||| ||| ||| | || ||| ||| ||| |||||| |||||| Sbjct 429 TGCGCCCCTGAGTACAAGGTCCGCCTGGACGGCAAGATCGTGCTGGAAGCCAAGGA 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166534403197088