Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq109206 217 1e-51 seq26752 125 6e-24 >seq109206 Length=27697 Score = 217 bits (240), Expect = 1e-51 Identities = 576/873 (66%), Gaps = 14/873 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || |||| ||| |||||| |||||||| ||||| || || || |||| Sbjct 8582 TGTTCCCGATTCAGTACCCGGAGATTTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTCT 8523 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||||| ||||||||| ||| | ||| |||||| | | |||||| | | || Sbjct 8522 GGACGGCGGAGGAGGTGGATCTCTCCCAAGACAATACCCAATGGGAGAACATGACTCCCG 8463 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 ||| | || |||||| ||||| | || ||||||||||| || ||||| ||||| Sbjct 8462 ATGAGAAGCACTTCATTTCCCATGTTCTTGCTTTCTTTGCCGCCTCAGACGGCATCGTTT 8403 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||| | | | | ||| | ||||| | ||||| ||||||||||| || | Sbjct 8402 TGGAGAATCTCGCCGGAAGGTTCATGAAGGAGATTCAAGTCGCGGAGGCGCGTGCCTTTT 8343 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 | || |||||||| || || |||||| | ||||| |||||||||||| | | | || | Sbjct 8342 ATGGGTTCCAGATCGCTATCGAGAATATTCACTCTGAGATGTACAGTCTCTTGTTGGAGA 8283 Query 61364 CGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGG 61423 | ||||| | || | ||| || | || | || | ||||||||||| || || Sbjct 8282 CTTACATTAAAGACCCGGCTGAGAAGAACCGCCTCTTTCACGCCATCGAGACCATTCCTT 8223 Query 61424 CGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTG 61483 ||| ||| || | |||||| | | |||||| | | || | | || | Sbjct 8222 GTGTGGCCAAGAAGGCTCAGTGGGCCATGAGGTGGATCGACGGCTCA---GAATCTTTCG 8166 Query 61484 GTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCG 61543 || || ||| | || || || |||||||| | || ||| ||| || || Sbjct 8165 CGGAGCGGTTGATCGCGTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGCG 8106 Query 61544 CAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGA 61603 | || |||||| | |||||||| || | ||||| ||||| || ||| || ||||||| Sbjct 8105 CGATATTTTGGCTAAAGAAACGCGGGTTGATGCCGGGTCTCACGTTCTCTAACGAGTTGA 8046 Query 61604 TATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGG 61663 |||| || || || || | || || ||||| || ||||| || | ||||| |||| Sbjct 8045 TATCGCGAGATGAAGGGTTACACTGCGATTTCGCGTGTTTGC--TTTACACGCT-TCTGA 7989 Query 61664 TGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAAC 61723 ||| | | |||||||| || | | || | || || || || |||||| Sbjct 7988 AGAAGAAGCTGAGCGAGGAGCGAGTCAGGGGAATCATCCGCGATGCCGTTGATATCGAGA 7929 Query 61724 AGGAATT--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAAT 61781 ||| || |||| ||| ||| |||| | | | || ||||| ||| || || Sbjct 7928 GGGAGTTCGTCTG--TGATGCTCTGCCTTGTGCGTTGGTGGGTATGAACGGTGATCTTAT 7871 Query 61782 GTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGC--GG 61839 || ||||||| || || || || || || || ||| | ||||| | | || | Sbjct 7870 GTGCAAGTATATCGAGTTCGTGGCTGATCGATTGATGGATGCGTTGGG--TTACGCCAAG 7813 Query 61840 ATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACG 61899 ||||| ||| | | ||||| ||||||| ||||| |||| ||| || | || ||||| Sbjct 7812 ATCTACAATGCCCAGAACCCCTTTGATTGGATGGAGCTGATATCGTTGCAGGGTAAGACC 7753 Query 61900 AATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 || || || ||||| | || || || || ||| Sbjct 7752 AACTTCTTTGAGAAGAGGGTTGGAGAGTACCAA 7720 >seq26752 Length=1779 Score = 125 bits (138), Expect = 6e-24 Identities = 250/367 (68%), Gaps = 4/367 (1%) Strand=Plus/Plus Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || ||| ||| || |||||||||||||||||| |||||| ||||||| | ||| || Sbjct 10 CGCTTGTTGCCTCCCTGGTCGACGTAGCGAGCGGTGTTGTTGTAGACACGAAGCATGGGC 69 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 ||||| ||||| || ||||||||||||| | ||| | || || || || | Sbjct 70 ACGAGACCGTTGGAAGTGCCATTGGTGCCACCAATGTAAGCGCCAGTGGCACGAATGCGG 129 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTG 66656 ||| || |||||||||||||| || |||| ||||| || || ||| | | | Sbjct 130 TGAGTGTTGAGACCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGATCTTGAGAGTA 189 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 || | | || || |||||| |||| |||| ||| | |||| |||| || || | Sbjct 190 TC--GTAGATACCCTCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAAGACGCCAGCT 247 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 | | | || || | || |||||| || || | || || || ||||| | | | Sbjct 248 GTGCCTGAGGGGTACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGTGAAGTACTTGTTGG 307 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCAC 66836 ||||||| ||||| |||||||| | || || |||| ||||| || || |||| ||| Sbjct 308 ACATGTAGTTGTAGGTCTCGATTGCGGCCTCGATGTCGTCGCCGTGGATGCCGACAGCAA 367 Query 66837 ATCGCAT 66843 ||||| Sbjct 368 CACGCAT 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396926106088640