Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq83441 190 6e-44 >seq83441 Length=11992 Score = 190 bits (210), Expect = 6e-44 Identities = 283/399 (71%), Gaps = 2/399 (1%) Strand=Plus/Minus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| |||||| | |||||||| || ||||||| ||||||||| || |||||| Sbjct 2027 TACCCGATCATCTCGATCGAAGACGGCCTGGACGAGTCCGACTGGGATGGCTGGAAAATC 1968 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 ||||| || | || | ||| | ||| |||| || |||||||| ||||| || ||| Sbjct 1967 CTTACCGACAAGATCGGCGAGAAAATCCAACTGGTGGGCGACGACTTGTTCGTGACCAAC 1908 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT-GCTAACTCAATCCTTATCAAAGT 2699 ||| ||| || |||| || | | || | | | || ||||| ||||| ||||| | Sbjct 1907 ACTAAGATCCTGAAAGAAGGCATCG-ATAAAAAGATCGCCAACTCGATCCTGATCAAGTT 1849 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||| ||||| || |||| ||||| | || || ||| | ||||| || | || || Sbjct 1848 CAACCAGATCGGCACCCTGACCGAAACCCTGGAAGCCATCCAGATGGCCAAGGCTGCGGG 1789 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 ||||| || || | || ||||| || || ||||| ||||| || || || || || | Sbjct 1788 CTACACCGCCGTGATCTCCCACCGCTCCGGCGAAACCGAAGACTCGACCATTGCCGACTT 1729 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 || || | || || || || || ||||| ||||| ||| ||| | ||||| | Sbjct 1728 GGCCGTGGGCACCTCGGCGGGCCAGATCAAGACCGGTTCCCTGTGCCGTTCCGACCGCGT 1669 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACT 2918 | | || |||||||||||||| ||||||||||| ||||| Sbjct 1668 TTCCAAGTACAACCAATTGCTGCGTATCGAAGAGCAACT 1630 Score = 123 bits (136), Expect = 8e-24 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 2686 ATCCTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATG 2745 ||||| ||||| | ||||| ||||| || |||| ||||| | || || ||| | ||| Sbjct 1169 ATCCTGATCAAGTTCAACCAGATCGGCACCCTGACCGAAACCCTGGAAGCCATCCAGATG 1110 Query 2746 GCGAAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCA 2805 || || | || || ||||| || || | || ||||| || || ||||| ||||| || Sbjct 1109 GCCAAGGCTGCGGGCTACACCGCCGTGATCTCCCACCGCTCCGGCGAAACCGAAGACTCG 1050 Query 2806 ACAATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCA 2865 || || || || | || || | || || || || || ||||| ||||| ||| Sbjct 1049 ACCATTGCCGACTTGGCCGTGGGCACCTCGGCGGGCCAGATCAAGACCGGTTCCCTGTGC 990 Query 2866 CGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACT 2918 ||| | ||||| || | || |||||||||||||| ||||||||||| ||||| Sbjct 989 CGTTCCGACCGCGTTTCCAAGTACAACCAATTGCTGCGTATCGAAGAGCAACT 937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155792927800944