Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_031264.1 Length=46877 Score E Sequences producing significant alignments: (Bits) Value seq124121 104 7e-18 >seq124121 Length=49848 Score = 104 bits (114), Expect = 7e-18 Identities = 255/383 (67%), Gaps = 8/383 (2%) Strand=Plus/Plus Query 3594 TGAGAACACTATCACCATCCTTGACGTTATCGGTGAAGATTACTGGTCTGGAGGTGGCGT 3653 |||| ||| ||| ||||| | ||| |||||| ||| |||| | || | ||||| Sbjct 20498 TGAGCACAGCATCTCCATCTTCGACCCTATCGGCTTCGATCCCTGGACAGGCGAGGGCGT 20557 Query 3654 TACGTCGAAACGGGTTGCAGCGGCGCTTCGGGCTATCGGCAACAATGAAATCTTTGTCGA 3713 || ||||||| |||| || ||| | || |||||| | | ||| | || | Sbjct 20558 CACCGCGAAACGCATTGCCGCCGCGTTACGCACTATCGACGGCGCTGACGTTACGGTGAA 20617 Query 3714 TATCAACTCTCCGGGCGGGGACTTCTTTGAAGGTGTGGCGATCTACAATCTGCTGCGCGC 3773 |||||||| |||||||| ||| | || ||||| |||| |||||||| |||||||| | Sbjct 20618 CATCAACTCGCCGGGCGGCGACATGTTCGAAGGCCTGGCTATCTACAACCTGCTGCGGGA 20677 Query 3774 GCAC-CCGGCGAAAGTCACAGTGCGCA---TTCTCGGCATGGCCGCTTCTGCCGCATCTG 3829 | || ||||| || ||| || || | || || ||||||| || || ||||| Sbjct 20678 GTACTCCGGC-AAGGTC---GTCATCAAGGTGCTGGGGCTGGCCGCATCGGCAGCATCAA 20733 Query 3830 TTATCGCTATGGCCGGTGATGAAGTCCTGATCGGCAAGGCAGGCTTCATTATGGTGCACA 3889 || | ||||||||||| || || || | |||| | || || || | | | || | Sbjct 20734 TTGTTGCTATGGCCGGAGACGAGGTGCGCATCGCCCGCGCCGGATTTCTGAACATTCATA 20793 Query 3890 ACGCTTGGGTTGTCGCGATGGGCAACCGCCACGATCTGGCCGAAGCCGCGAAGACCATGG 3949 | ||||| || || |||||||| || | || || | || ||| ||| || Sbjct 20794 ATTGCTGGGTAGTTGCCATGGGCAATCGTTATGACCTTACAGAGATGGCGCAGAGGCTGT 20853 Query 3950 AACCATTCGATGACGCGATGGCA 3972 ||| |||||| | || |||||| Sbjct 20854 TACCGTTCGATCAGGCCATGGCA 20876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149649008352168