Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq104221 98.7 1e-15 >seq104221 Length=23419 Score = 98.7 bits (108), Expect = 1e-15 Identities = 343/530 (65%), Gaps = 4/530 (1%) Strand=Plus/Plus Query 162310 CCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCT 162369 || |||||||| ||||| || | || || || ||||| ||| || || ||| Sbjct 10562 CCCGATGAAATCTATAATCTGGCCGCACAAAGCCACGTCGCGGTGAGCTTCGAGACGCCG 10621 Query 162370 GAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCTAGAAGCCGTCCGTCTT 162429 ||||| || || | |||||| | || || || || | || || || |||| || Sbjct 10622 GAATATACCGCCAATGCCGACGGCATCGGTACGCTGCGGCTCCTCGAGGCGATCCGCATT 10681 Query 162430 CTTGGTATGGAATCATACGTAA-GAATCTACCAAGCGAGCACCAGTGAGCTTTATGGGCT 162488 || ||||||||| | || | | | || || || || ||||| || || || Sbjct 10682 CTCGGTATGGAAA-AGACCTGTCGCTTTTATCAGGCATCGACATCGGAGCTGTACGGCCT 10740 Query 162489 AGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGAGT 162548 || ||||| ||| ||||| ||||| || || | ||||| || || || || || | Sbjct 10741 GGTACAGGAAGTACCTCAGAAGGAAACTACGCCGTTCTATCCGCGTTCGCCCTACGGCGC 10800 Query 162549 TGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACATGC 162608 || || | |||| | |||||| | ||||| | ||| ||||| ||| ||||| Sbjct 10801 GGCCAAGATGTATGCTTATTGGATCGTGGTGAACTATCGCGAAGCCTATGGCATGCATGC 10860 Query 162609 CTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACG 162668 || | ||| || || ||||||||||| ||| | | | || || || |||||||| || Sbjct 10861 ATCGAACGGCATCCTGTTCAATCACGAGAGCCCGCTGCGTGGCGAAACCTTCGTCACGCG 10920 Query 162669 CAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTTGG 162728 ||||||| || ||| | | || | | || | || | || ||||| Sbjct 10921 CAAGATCACGCGCGCCGCGGCTGCGATCAAGCTTGGTCGTCAGGACAAGCTGTGGCTTGG 10980 Query 162729 AAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGT-AGAGGCTATGTGGT 162787 || || ||||| || || ||||| || || || || || | ||| |||||| Sbjct 10981 TAATCTTGATGCCAAGCGAGATTGGGGCCATGCTCGCGAATATGTCCGTGGC-ATGTGGC 11039 Query 162788 TGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAG 162837 ||||||||||||| || |||| ||||| | ||| | || || || ||| Sbjct 11040 TGATGCTTCAGCAGGACGAGCCGGATGACTTCGTGCTGGCTACAGGCGAG 11089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690314178137760