Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq3417 78.8 2e-12 seq140 78.8 2e-12 seq3418 77.0 6e-12 seq2791 77.0 6e-12 >seq3417 Length=265768 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 183543 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 183602 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 183603 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 183662 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 183663 AACCAAGATCGGATATAGCTGGT 183685 >seq140 Length=324460 Score = 78.8 bits (86), Expect = 2e-12 Identities = 213/317 (67%), Gaps = 13/317 (4%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||| ||| |||| |||||||||| | |||| ||| || ||||| || |||| | Sbjct 324103 CCCCAGC-GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCC 324045 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 || || |||| |||||||| ||| | |||||||| ||| | | | | || || | Sbjct 324044 TGGCTC--TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTG 323988 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAG-CCTTAACAGGGCGACGAGTT 182 |||||||| | ||| |||| || ||||||||| |||| | ||||| | || Sbjct 323987 GTTAAGGGAACCCA--CCGG-AGCCATAGCGAAAGCGAGTCCTTCATAGGGCAA----TT 323935 Query 183 GGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACG 242 | || | | |||| | |||||||| ||| || |||| ||||| | ||| | Sbjct 323934 GTCAGCTTATGGCCCGAACCTGGGTGATCTATCCATGACCAGGATGAAG-CTTGGTGAAA 323876 Query 243 CGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGG 302 | | |||| |||||||| | |||||| | | ||||||| | | || |||||| Sbjct 323875 CTAAAGTGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGG 323816 Query 303 TGAAAGGCCAATCAAAC 319 ||||| |||| || ||| Sbjct 323815 TGAAATGCCACTCGAAC 323799 Score = 77.0 bits (84), Expect = 6e-12 Identities = 211/316 (67%), Gaps = 7/316 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||| ||| |||| |||||||||| | |||| ||| || ||||| || |||| | Sbjct 312094 CCCCAGC-GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCC 312152 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 || | |||| |||||||| ||| | |||||||| ||| | | | | || || | Sbjct 312153 TGGG-CTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTG 312210 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 |||||||| | ||| |||| || ||||||||| ||| | ||||| | || Sbjct 312211 GTTAAGGGAACCCA--CCGG-AGCCATAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCA 312266 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 || | | | |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 312267 CTGCTTATGGGCCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAAC 312326 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 |||||| |||||||| | |||||| | | ||||||| | | || ||||||| Sbjct 312327 TAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGT 312386 Query 304 GAAAGGCCAATCAAAC 319 |||| |||| || ||| Sbjct 312387 GAAATGCCACTCGAAC 312402 Score = 77.0 bits (84), Expect = 6e-12 Identities = 211/316 (67%), Gaps = 7/316 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||| ||| |||| |||||||||| | |||| ||| || ||||| || |||| | Sbjct 320366 CCCCAGC-GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCC 320308 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 || | |||| |||||||| ||| | |||||||| ||| | | | | || || | Sbjct 320307 TGGG-CTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTG 320250 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 |||||||| | ||| |||| || ||||||||| ||| | ||||| | || Sbjct 320249 GTTAAGGGAACCCA--CCGG-AGCCATAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCA 320194 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 || | | | |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 320193 CTGCTTATGGGCCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAAC 320134 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 |||||| |||||||| | |||||| | | ||||||| | | || ||||||| Sbjct 320133 TAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGT 320074 Query 304 GAAAGGCCAATCAAAC 319 |||| |||| || ||| Sbjct 320073 GAAATGCCACTCGAAC 320058 >seq3418 Length=161897 Score = 77.0 bits (84), Expect = 6e-12 Identities = 211/316 (67%), Gaps = 7/316 (2%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||| ||| |||| |||||||||| | |||| ||| || ||||| || |||| | Sbjct 106314 CCCCAGC-GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCC 106372 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 || | |||| |||||||| ||| | |||||||| ||| | | | | || || | Sbjct 106373 TGGG-CTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTG 106430 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 |||||||| | ||| |||| || ||||||||| ||| | ||||| | || Sbjct 106431 GTTAAGGGAACCCA--CCGG-AGCCATAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCA 106486 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 || | | | |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 106487 CTGCTTATGGGCCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAAC 106546 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 |||||| |||||||| | |||||| | | ||||||| | | || ||||||| Sbjct 106547 TAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGT 106606 Query 304 GAAAGGCCAATCAAAC 319 |||| |||| || ||| Sbjct 106607 GAAATGCCACTCGAAC 106622 Score = 77.0 bits (84), Expect = 6e-12 Identities = 211/316 (67%), Gaps = 7/316 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||| ||| |||| |||||||||| | |||| ||| || ||||| || |||| | Sbjct 143701 CCCCAGC-GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCC 143643 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 || | |||| |||||||| ||| | |||||||| ||| | | | | || || | Sbjct 143642 TGGG-CTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTG 143585 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 |||||||| | ||| |||| || ||||||||| ||| | ||||| | || Sbjct 143584 GTTAAGGGAACCCA--CCGG-AGCCATAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCA 143529 Query 184 GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 || | | | |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 143528 CTGCTTATGGGCCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAAC 143469 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 |||||| |||||||| | |||||| | | ||||||| | | || ||||||| Sbjct 143468 TAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGT 143409 Query 304 GAAAGGCCAATCAAAC 319 |||| |||| || ||| Sbjct 143408 GAAATGCCACTCGAAC 143393 >seq2791 Length=2666840 Score = 77.0 bits (84), Expect = 6e-12 Identities = 105/145 (72%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG---TCGCGGTAACGCGTGATG 249 ||| ||||||| |||||| ||| ||||||||||||| || | |||| | || Sbjct 2569154 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGATCTC--TAACAGGCCTTG 2569211 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||||||||||| | || | ||| | |||||||| | || ||||||||||||| Sbjct 2569212 GAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGG 2569271 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 |||| ||| | ||| |||||| || Sbjct 2569272 CCAACCAAGATCGGATATAGCTGGT 2569296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972766749696