Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq3417 152 7e-35 seq2791 152 7e-35 seq3418 141 1e-31 seq140 141 1e-31 seq1043 114 2e-23 seq418 109 8e-22 seq2144 104 3e-20 seq753 86.0 9e-15 >seq3417 Length=265768 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 184890 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 184832 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 184831 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 184774 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 184773 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 184723 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 184722 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 184663 Query 246 GTA 248 ||| Sbjct 184662 GTA 184660 >seq2791 Length=2666840 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 2570474 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 2570416 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 2570415 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 2570358 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 2570357 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 2570307 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 2570306 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 2570247 Query 246 GTA 248 ||| Sbjct 2570246 GTA 2570244 >seq3418 Length=161897 Score = 141 bits (156), Expect = 1e-31 Identities = 180/248 (73%), Gaps = 20/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 107680 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 107622 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| || || |||| ||| || Sbjct 107621 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCT-------- 107570 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || ||||||||||||||||||||||||||| |||||||||| Sbjct 107569 -----TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 107521 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| |||||||||||||| Sbjct 107520 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGT 107461 Query 241 TTACGGTA 248 || |||| Sbjct 107460 TTCGGGTA 107453 Score = 141 bits (156), Expect = 1e-31 Identities = 180/248 (73%), Gaps = 20/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 142335 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 142393 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| || || |||| ||| || Sbjct 142394 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCT-------- 142445 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || ||||||||||||||||||||||||||| |||||||||| Sbjct 142446 -----TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 142494 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| |||||||||||||| Sbjct 142495 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGT 142554 Query 241 TTACGGTA 248 || |||| Sbjct 142555 TTCGGGTA 142562 >seq140 Length=324460 Score = 141 bits (156), Expect = 1e-31 Identities = 180/248 (73%), Gaps = 20/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 313460 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 313402 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| || || |||| ||| || Sbjct 313401 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCT-------- 313350 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || ||||||||||||||||||||||||||| |||||||||| Sbjct 313349 -----TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 313301 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| |||||||||||||| Sbjct 313300 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGT 313241 Query 241 TTACGGTA 248 || |||| Sbjct 313240 TTCGGGTA 313233 Score = 141 bits (156), Expect = 1e-31 Identities = 180/248 (73%), Gaps = 20/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 319002 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 319060 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| || || |||| ||| || Sbjct 319061 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCT-------- 319112 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || ||||||||||||||||||||||||||| |||||||||| Sbjct 319113 -----TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 319161 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| |||||||||||||| Sbjct 319162 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGT 319221 Query 241 TTACGGTA 248 || |||| Sbjct 319222 TTCGGGTA 319229 Score = 136 bits (150), Expect = 5e-30 Identities = 177/242 (73%), Gaps = 22/242 (9%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 289300 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCC-ATACATGGTCTTAC-GACTTTGCGG 289243 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| || || |||| ||| || Sbjct 289242 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCCCT-------- 289191 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || ||||||||||||||||||||||||||| |||||||||| Sbjct 289190 -----TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 289142 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| ||||||||||||||| Sbjct 289141 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCT-ACCACCTGTGTCGGT 289083 Query 241 TT 242 || Sbjct 289082 TT 289081 Score = 113 bits (124), Expect = 6e-23 Identities = 173/242 (71%), Gaps = 26/242 (11%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 322750 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCC-ATACAT-GTCTTAC-GACTTTGCGG 322806 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| || || |||| ||| | Sbjct 322807 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACCCC---------- 322856 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || ||||||||||||||||||||||||||| |||||| ||| Sbjct 322857 -----TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTG-CGAG 322904 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCT-ACCTGACCACCTGTGTCGG 239 ||||||| | |||| | || | ||| ||||||||| |||| ||||||||||||| Sbjct 322905 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTAACCTACCCACCTGTGTCGG 322964 Query 240 TT 241 || Sbjct 322965 TT 322966 Score = 95.1 bits (104), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT--AACCACAGTTCA 198 |||||||||||||| ||||||||||||| |||||||||| |||||| || | || Sbjct 296435 GGCACCCCTTCTCC-GAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAAGAAGGTTTGT 296493 Query 199 CCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | || | ||| ||||||||||||| |||||||||||||||| ||||| Sbjct 296494 CTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTT-CGGTA 296542 >seq1043 Length=14449934 Score = 114 bits (126), Expect = 2e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 5566306 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 5566247 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 5566246 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 5566199 >seq418 Length=2515040 Score = 109 bits (120), Expect = 8e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||| ||||||||||||| |||||||||| ||||||| | |||| | Sbjct 1582594 GGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 1582535 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 1582534 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 1582487 >seq2144 Length=7130628 Score = 104 bits (114), Expect = 3e-20 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 6354310 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 6354369 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 || | ||| ||||||||||||| ||||||||||| Sbjct 6354370 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTC 6354406 >seq753 Length=174684 Score = 86.0 bits (94), Expect = 9e-15 Identities = 130/187 (70%), Gaps = 20/187 (11%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | |||| || ||| ||| Sbjct 33083 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCAA 33025 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||| ||||||| ||||||||||| || || |||||||| Sbjct 33024 AGACCTATGTTTTTGGTAAACAGTCGGCCGGGCCTGGTCACTGCGACC------------ 32977 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | || | | |||| | |||||||||||||||| ||| |||||||||| Sbjct 32976 -CCCTTTGT------GAGGAGGCAACTCTTCTCCCGAAGTTACATGGCTATTTTGCCGAG 32924 Query 181 TTCCTTA 187 ||||||| Sbjct 32923 TTCCTTA 32917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694377007114