Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= AAMG01001210.1 Length=647 Score E Sequences producing significant alignments: (Bits) Value seq117 84.2 9e-14 >seq117 Length=3147893 Score = 84.2 bits (92), Expect = 9e-14 Identities = 112/153 (73%), Gaps = 12/153 (8%) Strand=Plus/Plus Query 276 GCTCCAAAGAGGAAAAGGCCAAGGCAAGTAATGGAAAATCATGGAGGATTTGGTATAAGG 335 ||||| |||||||| || |||||||| || ||| ||||| || | | || | || Sbjct 1246761 GCTCCGAAGAGGAAGAGACCAAGGCAGGTTTCGGAGAATCAGGGCAGCGCTAGTGTTCGG 1246820 Query 336 AGCAGCCC--CATT----TCGGCTAAAGTGGAGATGGATCAAACAACAATGAAGATGGAG 389 |||||||| ||| || ||||||| ||||||||||| || ||||||| |||| Sbjct 1246821 AGCAGCCCATCATCGGCCTCTGCTAAAGCAGAGATGGATCA---GACGATGAAGACGGAG 1246877 Query 390 GTTTCTTCT---CCTAATTTGGAGAAGACCCCA 419 ||||||||| || ||||| ||||| || ||| Sbjct 1246878 GTTTCTTCTTCCCCAAATTTCGAGAAAACACCA 1246910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1964730744484