Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= AAMG01001756.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq268 111 3e-22 >seq268 Length=6919517 Score = 111 bits (122), Expect = 3e-22 Identities = 189/273 (69%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 1 CGAGTCAATGTCCTAGGGCATGTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGG 60 ||| || ||||| || || || || ||| |||| ||| | || ||||| ||| |||| Sbjct 6045764 CGAATCGGTGTCCAAGAGCGTGCGTGGGGATGGGCAAAGACGGTAATTTACTATGCTGGG 6045705 Query 61 GAGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCT 120 ||| ||||||||| | | |||||||| ||||| | ||||| || | ||| Sbjct 6045704 CAGAATCCGACCCGGAGATCCGGGTCGGAGCCTGCGGGATTGATCTAGGCAAAATGACGG 6045645 Query 121 TGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAACA 180 | || ||||| | || || || || || || ||||| ||||| ||||||| Sbjct 6045644 TAGTGACCGGAGCTCCATACCAGGGTGCACCGCACGGGTTTTTCTTCTCGGATAACAAT- 6045586 Query 181 AAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGAT 240 ||| ||||||||| ||||| || || || || || || |||||||| ||||| Sbjct 6045585 ----GGA-GGGCAAAATCGTAAACTGGTGAAAATAGACGTCCCAGATGAATTCCTTGGAT 6045531 Query 241 TTGTGCAATCTGGATGCTGTGTGGAGATCTGAA 273 ||||||| ||||||||| || ||||| |||| Sbjct 6045530 TTGTGCAGTCTGGATGCGCAGTTGAGATATGAA 6045498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918368609088