Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq179 168 5e-37 seq672 91.5 1e-13 >seq179 Length=2504955 Score = 168 bits (186), Expect = 5e-37 Identities = 386/578 (67%), Gaps = 11/578 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || ||||| | | || ||| |||||||| || || | || || |||| Sbjct 2367004 TGTTCCCGATTGAGTACCCGCAAATCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTCT 2366945 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||||| ||||||||| ||| | || | || | | | ||||| || | || Sbjct 2366944 GGACGGCGGAGGAGGTTGATCTCTCTCAGGATCTCCGTCAGTGGGAAGCCCTAACCTCCG 2366885 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 || | || || ||||| || | | || || |||||||| || ||||| ||||| Sbjct 2366884 ACGAGAAGCACTTTATTAAGCACATACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTT 2366825 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||| | | ||| ||| | ||||||| || || ||||||||||| || | Sbjct 2366824 TGGAGAATCTCGCCGGACGGTTCATGAAGGAGGTCCAGGTTGCGGAGGCGCGTGCGTTTT 2366765 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 |||| |||||||| ||||| |||||| ||||||| |||||||||||| |||| | || | Sbjct 2366764 ACGGATTCCAGATCGCCATCGAGAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGA 2366705 Query 61364 CGTACATCAGGGAGCGGGCGGAACGTGAACGA----TTGTTCAATGCCATCGAGACGATA 61419 | ||||||| ||| | ||| | ||| || |||||| | || || || || | Sbjct 2366704 CTTACATCAAGGA---TTCTGAA-GAGAAGGACAGGTTGTTCCACGCGATTGATACTGTG 2366649 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 || ||| || ||| || | ||||| || ||||| | ||| || Sbjct 2366648 CCCTGTGTGGAGAAGAAGGCTAAGTGGGCTCTCCGCTGGAT---TGATGGCTCGGAATCA 2366592 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 || | ||| || ||| |||| ||||| || ||||| | || ||| || ||| Sbjct 2366591 TTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCCGGGAGTTTT 2366532 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 || || || ||| |||| || || || || ||||| || || ||||| |||||| Sbjct 2366531 TGTGCCATATTCTGGCTGAAAAAGCGCGGTCTGATGCCGGGGTTGTCCTTCTCGAATGAG 2366472 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 ||||| || || || |||||| |||| || ||||| || Sbjct 2366471 TTGATCTCGCGAGATGAGGGCTTGCACTGCGATTTCGC 2366434 >seq672 Length=1896293 Score = 91.5 bits (100), Expect = 1e-13 Identities = 189/276 (68%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || ||||| | | || ||| ||||| || || || | || || |||| Sbjct 1273564 TGTTCCCGATTGAGTACCCGCAAATCTGGGTGATGTATAAGAAAGCTGTTGCGTCTTTCT 1273505 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGG-AGCGTTTATC---G 61179 |||||||||||||||||||| | || | || | | | |||| ||| | | | | Sbjct 1273504 GGACGGTGGAGGAGGTCGATCTCTCTCAGGATCTCCGTCAGTGGGAAGCCCTAACCTCTG 1273445 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 || ||| |||| || |||||||| || | || || |||||||| || |||| ||| Sbjct 1273444 AGAATTGA--AACACTTTATTAAACACGTACTTGCCTTTTTTGCCGCCTCCGACGACATC 1273387 Query 61240 GTCAATGAGAAT-TTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTG 61298 || |||||| || ||| ||| || | ||||||| | | ||||||||||| Sbjct 1273386 GTTTTGGAGAATCTTGCTGG-ACGGTTGATGAAGGAGGTCTAGATTACGGAGGCGCGTGC 1273328 Query 61299 TTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || || || ||| ||| |||| |||||| |||| Sbjct 1273327 ATTTTATGGATTCTAGACCTCCATTGAGAATATCCA 1273292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397551438559520