Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014744.1 Length=1383 Score E Sequences producing significant alignments: (Bits) Value seq519 78.8 8e-12 >seq519 Length=3254320 Score = 78.8 bits (86), Expect = 8e-12 Identities = 122/172 (71%), Gaps = 8/172 (5%) Strand=Plus/Plus Query 1034 GAATTGCATAAGCACATGGAGATGAGGTTCGCCATTCTCGTGGAGTTCTCTGCAAATTTT 1093 ||| || ||||| ||||| | ||| ||||| || || ||| |||||| |||| | | | Sbjct 1743324 GAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCT 1743383 Query 1094 AATATATTTTTTATTGGTTGGGGTATTTAA----TTTGAGTATTTGTTCGAGTGCCTCTT 1149 || ||||| ||| || ||| || || | |||||| || | || || || | Sbjct 1743384 TATGAATTTTAGATTTGTAGGG-TAGTTGAGGCTTTTGAGA---TGATGAAGAGCATCAT 1743439 Query 1150 CTTTGGATAGAGAGCATTTTGGGAAAGTGAGGAAATAATTTTTTGCATTTAT 1201 |||| | || || ||| |||||||||||||||||| |||||| |||||| Sbjct 1743440 CTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTAT 1743491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4316643230012