Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_033276.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq3069 122 2e-24 seq2957 113 8e-22 seq519 111 3e-21 seq1129 109 1e-20 seq1694 102 1e-18 >seq3069 Length=10854949 Score = 122 bits (134), Expect = 2e-24 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 1281 CAACGCTTTCCGCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCGTGGTTCAT 1340 ||| ||||||| |||||| ||||| |||||||||| ||||||||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1341 GTTGAGTGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGAGTTTGAATCTCCCA 1400 ||| | ||| || | ||||| ||||| ||||||||| |||||| || | | || || Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1401 GATATACACGCCATTCTCTGC-TTGAGCTGCAGTGATGGATTCCCCTGTGCGTGAATCCA 1459 ||||| ||| |||| | ||| | ||| | ||||| || ||| ||||| ||| || Sbjct 3754521 AATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1460 TGGTTGTGGCAGTTGATGTGTACGTAGTATGAGCACCCACAGTTTAGATCAACCCTCTT 1518 | ||| | ||| || |||| | |||||||| ||| ||||| | || || ||| | ||| Sbjct 3754580 TTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACGCTT 3754638 >seq2957 Length=4215098 Score = 113 bits (124), Expect = 8e-22 Identities = 168/232 (72%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 1282 AACGCTTTCCGCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCGTGGTTCATG 1341 || |||||| ||||||| |||||||||||||||| ||||||| | | || || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1342 TTGAGTGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGAGTTTGAATCTCCCAG 1401 |||| || || | ||||| |||||||||||||||| || || || | | ||| || Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAG 1238868 Query 1402 ATATACACGCCATTCTCTGC-TTGAGCTGCAGTGATGGATTCC-CCTGTGCGTGAATCCA 1459 |||| || |||| | ||| ||||| ||| ||| || |||| | ||||| |||||| Sbjct 1238869 GTATATACTTCATTGT-TGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAATCCA 1238926 Query 1460 TGGTTGTGGCAGTTGATGTGTACGTAGTAT-GAGCACCCACAGTTTAGATCA 1510 | ||| |||| ||||| | ||| ||| | ||| ||||| ||||||||| Sbjct 1238927 TTGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq519 Length=3254320 Score = 111 bits (122), Expect = 3e-21 Identities = 165/228 (72%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 1287 TTTCCGCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCGTGGTTCATGTTGAG 1346 ||||| || |||| ||||| |||||||||| |||||||||||||| |||| | Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1347 TGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGAGTTTGAATCTCCCA--GATA 1404 | | || | |||| |||||||||||||||||||| | || | | ||||| |||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1405 TACACGCCATTCTCTGC-TTGAGCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGT 1463 |||| ||||| | ||| ||||| ||||| |||||| ||| | ||||||| || Sbjct 1741996 TACA--CCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 Query 1464 TGTGGCAGTTGATGTGTACGTAGTATGAGCACCCACAGTTTAGATCAA 1511 | ||||| |||||| ||| ||| ||| ||||||| || ||||| Sbjct 1742052 TCCTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAA 1742099 Score = 100 bits (110), Expect = 5e-18 Identities = 246/362 (68%), Gaps = 12/362 (3%) Strand=Plus/Plus Query 2223 CCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTC 2282 || || |||||||||||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2283 TCCAGATAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2342 || | || || || || | ||| ||||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2343 GCTGACCTGGTTGGGGAGA-CCAGGTCGAAGAATCGCTGATTCTTGCACTGGTATTTCCC 2401 | || ||| ||| || | ||| || |||| ||||| |||| | |||| || Sbjct 1743262 ATGGTTCT-GTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2402 CTCGAACTGGATGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAGA- 2460 ||| ||||| || || || | ||| |||||||| || ||| || ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2461 TCTTGATATATTTT---TTGGAAGTTGGGGTTTGTAGGTTTATTAATTGTGAAAGTGCTT 2517 |||| || ||||| || | || || ||| ||| || | | || ||| || | Sbjct 1743381 TCTT-ATGAATTTTAGATTTGTAG--GGTAGTTG-AGGCTTTTGAGATGATGAAGAGCAT 1743436 Query 2518 CTTCTTTCGTTAAAGAGCA-CTTGGGATATGTGAGGAAATAATTTTTGGCATTTATCTTA 2576 | ||||| || | || || ||||||| | |||||||||| ||||||| |||||| || Sbjct 1743437 CATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATTCTA 1743495 Query 2577 AA 2578 || Sbjct 1743496 AA 1743497 Score = 86.0 bits (94), Expect = 1e-13 Identities = 265/397 (67%), Gaps = 20/397 (5%) Strand=Plus/Plus Query 2230 CAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGAT 2289 ||||||||||||| || ||||| || |||| || | |||||| ||||| || | | Sbjct 1748964 CAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGT 1749023 Query 2290 AGGACTTGA--CGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGA 2347 | || || | | || || |||||||||| |||| || |||||||| || | Sbjct 1749024 ATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGT 1749083 Query 2348 CCTGGTTGGGGAGACCAGGTCGAAGAATCGCTGATTCTTGCACTGGTATTTCCCCTCGAA 2407 || || ||| | |||||| || | ||||| |||| | ||||||| ||| Sbjct 1749084 TCT-ATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAA 1749142 Query 2408 CTGGATGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGAAGCTCTCTGCAGATCTTGAT 2467 || || || || || | ||| ||||||| | || ||| || |||||||| | || || Sbjct 1749143 CTAGA-GATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACACTTTTAT 1749200 Query 2468 ATATTT----TTTGGAAGTTGGGGTTTGTAGGTTTATTAATTGTGAAAGTGCTTCTTCTT 2523 |||| |||| | | | | ||| |||||| | | || ||| | || |||| Sbjct 1749201 GAATTTAAGATTTGTAGGGTAG---TTG-AGGTTTTTGAGATGACGAAGAACATCATCTT 1749256 Query 2524 TCGTTAAAGAGCA-CTTGGGATATGTGAGGAAATAATTTTTGGCATTTATCTTAA--ATG 2580 | || | | || ||||||| | ||||| |||||||||||| |||||| ||| ||| Sbjct 1749257 TTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTCTAAACATG 1749315 Query 2581 GTCTTGTAGGAGGCA-TGGTCAATGGACACCGATTGA 2616 | ||| |||| || | |||| | ||||||||| Sbjct 1749316 TTATTG--GGAGCCATTTTTCAAATGTTACCGATTGA 1749350 >seq1129 Length=1508174 Score = 109 bits (120), Expect = 1e-20 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 1287 TTTCCGCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCGTGGTTCATGTTGAG 1346 ||||| | ||||| |||||||||||||||| ||||||| |||| | |||||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1347 TGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGAGTTTGAATCTCCCAGATATA 1406 || || | ||||| | |||||||||| ||||| ||||| ||| || ||||| |||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATAG-GGGGAATTTAAACTTCCCAAGTATA 693657 Query 1407 CACGCCATTCTCTGCTTGAGCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTTGT 1466 |||||||| | | | || ||| ||| ||| ||| || || ||||||| ||| Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGAGATATT-CCCGGTACGAAAATCCATCGTTCA 693598 Query 1467 GGCAGTTGATGTGTACGTAGTATGAGCACCCACAGTTTAGATCAACCCTCTT 1518 | |||| |||||| ||| |||| ||| | | | | || || ||| | ||| Sbjct 693597 TGTAGTTAATGTGTTGGTAATATGTGCAACAATAATATATATAAACGCGCTT 693546 >seq1694 Length=789422 Score = 102 bits (112), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 1297 TTGTGATTGAACTGTATCTGGACAGTGATGATGTCGTGGTTCATGTTGAGTGGCCTGTTG 1356 |||| ||||||||||| |||| || ||||||||||| |||||| ||| | | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1357 TGGTGCTCTGTTATCTTGAAATAGAGGGGAGTTTGAATCTCCCAGATATACACGCCATTC 1416 | ||| |||||||||||||||||| || || | | ||||| ||| |||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1417 TCTGC-TTGAGCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGA 1475 | ||| |||| |||||| |||||| |||| ||||||| ||| ||| || | Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAA 596463 Query 1476 TGTGTACGTAGTATGAGCACCCACAGTTTAGATCA 1510 | ||| ||| |||| ||| ||||| | || |||| Sbjct 596462 TATGTTGGTAATATGTGCAACCACAATATATATCA 596428 Score = 84.2 bits (92), Expect = 4e-13 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1285 GCTTTCCGCAGGTTGTGATTGAACTGTATCTGGACAGTGATGATGTCGTGGTTCATGTTG 1344 ||||||| | || || ||||||| ||||| || ||||||||| |||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1345 AGTGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGAGTTTGAATCTCCCAGATA 1404 | ||| || | ||||| |||||||||||||||||||||| || | | || || || Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAGTA 600113 Query 1405 TACACGCCATT 1415 || ||| |||| Sbjct 600112 TATACGTCATT 600102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8690884368208