Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq43 122 5e-26 seq4746 75.2 6e-12 seq5256 73.4 2e-11 >seq43 Length=10018 Score = 122 bits (134), Expect = 5e-26 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | |||||| | Sbjct 9904 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTTAAAGCAACATCCGCT 9963 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||| Sbjct 9964 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTC 10018 >seq4746 Length=2643 Score = 75.2 bits (82), Expect = 6e-12 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | |||||| || Sbjct 5 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGTGGAGTCCTTAAAGCAACATCCGCC 64 Query 61 GATCCCTAGTCGGCAT 76 ||||||| |||||||| Sbjct 65 GATCCCTGGTCGGCAT 80 >seq5256 Length=2649 Score = 73.4 bits (80), Expect = 2e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 65 CCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 163 CCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278197986000