Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq5902 154 3e-35 seq5426 152 9e-35 seq83 147 4e-33 seq6545 145 1e-32 seq5802 136 7e-30 seq7551 125 1e-26 seq5286 122 2e-25 seq5256 122 2e-25 seq7612 118 2e-24 seq1785 118 2e-24 seq7326 111 3e-22 seq4746 102 1e-19 seq10224 98.7 2e-18 seq25416 96.9 6e-18 seq32468 86.0 1e-14 seq8055 77.0 6e-12 seq3769 77.0 6e-12 seq33006 75.2 2e-11 >seq5902 Length=2656 Score = 154 bits (170), Expect = 3e-35 Identities = 132/162 (81%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||| ||||| | ||| || ||||||||||| ||||| ||||||||| | || Sbjct 2655 CTATTACGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGT 2596 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| || |||||||||||| ||||||||||||| ||||| ||| ||||||||||| || Sbjct 2595 ATTTCATAGTCAGAGGTGAAGTTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATT 2536 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| ||||||||||| |||| Sbjct 2535 TGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 2495 >seq5426 Length=2651 Score = 152 bits (168), Expect = 9e-35 Identities = 130/159 (82%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 142 ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATA 201 |||||| | |||| ||||| ||||| | ||| || ||||||||||| ||||| | Sbjct 2648 ATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACA 2590 Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261 |||||||| | ||||| ||| |||||||||||||||||||||||||| ||||| ||| Sbjct 2589 GTCGGGGGCATTCGTATTTAATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAAC 2530 Query 262 TACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||||||||| || |||||||||||||||||||||| Sbjct 2529 AACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA 2491 >seq83 Length=10070 Score = 147 bits (162), Expect = 4e-33 Identities = 113/133 (85%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||||| Sbjct 1 ATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGA 60 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||||| ||||| ||| |||| |||||| || |||||||||||||||||||||| ||| Sbjct 61 TTTATGAAAGACGAACAACTGTGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAA 119 Query 306 CGAAAGTTAGGGG 318 |||||||| |||| Sbjct 120 CGAAAGTTGGGGG 132 >seq6545 Length=2662 Score = 145 bits (160), Expect = 1e-32 Identities = 130/162 (80%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| ||||| | ||| || ||||||||||| Sbjct 2660 ATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGATTAA 2602 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | |||||| || |||||||||||||||||||||||||| | Sbjct 2601 CAGGGACAGTCGGGGGCATTAGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 2542 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATT 295 |||| ||| ||||||||||| || ||||||||||||||||| Sbjct 2541 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATT 2500 >seq5802 Length=2655 Score = 136 bits (150), Expect = 7e-30 Identities = 130/164 (79%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 87 AATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAG 145 |||||||||| |||||||| |||| |||| | |||||||||||||| |||| | |||| Sbjct 1 AATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATAG 60 Query 146 GACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCG 205 || | |||| ||||| |||| | ||| || ||||||||||| ||||| ||||| Sbjct 61 GATTT-CGGTCCTATTACGTTGTCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCG 119 Query 206 GGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| | ||||| || ||||||||||||||||||||||||| Sbjct 120 GGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 163 >seq7551 Length=2672 Score = 125 bits (138), Expect = 1e-26 Identities = 127/163 (78%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 107 GCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGT 165 |||| |||| | |||||||||||||| |||| | |||||| | |||| ||||| || Sbjct 2 GCCTACGCTCTGTATACATTAGCATGGGATAACATTATAGGATTT-CGGTCCTATTACGT 60 Query 166 TGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTG 225 ||| | ||| || |||| |||||| ||||| ||||||||| | ||||| || | Sbjct 61 TGGCCTTCGGGATCGGAGTAACGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAG 120 Query 226 TCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCG 268 ||||||||||||||||||||||||| ||||| ||| |||||| Sbjct 121 TCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCG 163 >seq5286 Length=2650 Score = 122 bits (134), Expect = 2e-25 Identities = 116/147 (79%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 |||||||||||||| |||| | |||||| | |||| ||||| ||||| | ||| Sbjct 2649 ATACATTAGCATGGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGAT 2591 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || | ||||||||| ||||||||||||||| | ||||| || |||||||||||||| Sbjct 2590 CGGAGAAATGATTAACAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAAT 2531 Query 239 TCTTGGATTTATTGAAGACTAACTACT 265 |||||||||||| ||||| ||| ||| Sbjct 2530 TCTTGGATTTATGAAAGACGAACAACT 2504 >seq5256 Length=2649 Score = 122 bits (134), Expect = 2e-25 Identities = 90/104 (87%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || |||||||||||||||||||||||||| ||||| ||| ||||||||||| Sbjct 7 GTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCA 66 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||||||||| |||||||||| ||||||||||| |||| Sbjct 67 TTTGCCAAGGATGTTATCATTAATCA-AGAACGAAAGTTGGGGG 109 >seq7612 Length=2673 Score = 118 bits (130), Expect = 2e-24 Identities = 111/139 (80%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 2530 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 2589 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| ||||| | ||| || |||||||| Sbjct 2590 GGTATAACATTATAGGA-TTTCGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 2648 Query 191 TAATAGGGATAGTCGGGGG 209 ||| ||||| ||||||||| Sbjct 2649 TAACAGGGACAGTCGGGGG 2667 >seq1785 Length=10100 Score = 118 bits (130), Expect = 2e-24 Identities = 126/164 (77%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 99 CAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 ||||||| |||| |||| | |||||||||||||| |||| | ||| || | |||| | Sbjct 9938 CAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATATGATTT-CGGTCC 9996 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||| ||||| | ||| | ||||||||||| ||||| ||||||||| | ||| Sbjct 9997 TATTACGTTGGCCTTCGGGATCTGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTA 10056 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261 || | |||||||||||||||||||||||||| ||||| ||| Sbjct 10057 TTTCTTAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAAC 10100 >seq7326 Length=2670 Score = 111 bits (122), Expect = 3e-22 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 177 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 118 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGAT 286 |||||||| ||||| ||| | ||||||||| || |||||||| Sbjct 117 GGATTTATGAAAGACGAACAATTGCGAAAGCATTTGCCAAGGAT 74 >seq4746 Length=2643 Score = 102 bits (112), Expect = 1e-19 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| || |||||||||||||||||||||||||| ||||| ||| ||||||||||| | Sbjct 162 TATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCAT 103 Query 276 TCACCAAGGATGTTTTCATTA 296 | |||||||||||||||||| Sbjct 102 TTGCCAAGGATGTTTTCATTA 82 >seq10224 Length=2703 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| | ||| | |||||||||||| Sbjct 2582 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATACTCTGTATACATTAGCAT 2641 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| ||||| | ||| || |||||||| Sbjct 2642 GGGATAACATTATAGGA-TTTCGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 2700 Query 191 TAA 193 ||| Sbjct 2701 TAA 2703 >seq25416 Length=5160 Score = 96.9 bits (106), Expect = 6e-18 Identities = 124/171 (73%), Gaps = 19/171 (11%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||| ||| Sbjct 26 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAACAT 85 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | || || ||| | ||| ||| || |||||||| Sbjct 86 GGGATAACA---------------TTATACATTG--GCCTTC-GGGATCGGAGTAATGAT 127 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCT 241 ||| ||||| ||||||||| | ||||| || ||||||||||||||||| Sbjct 128 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCT 178 >seq32468 Length=67942 Score = 86.0 bits (94), Expect = 1e-14 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 32288 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTATATACATTAGCAT 32347 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATT 161 || |||| | |||||| | |||| ||||| Sbjct 32348 GGGATAACATTATAGGA-TTTCGGTCCTATT 32377 >seq8055 Length=2677 Score = 77.0 bits (84), Expect = 6e-12 Identities = 58/67 (87%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 2606 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 2665 Query 131 GGAATAA 137 || |||| Sbjct 2666 GGGATAA 2672 >seq3769 Length=2625 Score = 77.0 bits (84), Expect = 6e-12 Identities = 58/67 (87%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 2558 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 2617 Query 131 GGAATAA 137 || |||| Sbjct 2618 GGGATAA 2624 >seq33006 Length=53021 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/58 (90%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||| || |||||||||||||||||||||| ||||||||||| |||| Sbjct 44751 CTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 44807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914491635200