Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq2810 196 1e-47 seq32979 172 1e-40 seq33745 109 1e-21 seq28377 109 1e-21 seq33354 105 2e-20 seq34189 82.4 2e-13 >seq2810 Length=20389 Score = 196 bits (216), Expect = 1e-47 Identities = 247/335 (74%), Gaps = 11/335 (3%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 10558 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 10499 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 10498 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 10442 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 10441 AAGTCGC---CAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 10385 Query 184 GGGGGTGGAATTCCACGTGT-AGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 | | |||||||| | |||| || ||||||| | |||| | | |||||| |||| | Sbjct 10384 GAGAGTGGAATTTCGTGTGTTAGGGGTGAAATCCTGAGATCCGCGAAGGAACGCCAAAAG 10325 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||||| | ||||| || |||||| | | ||||||| |||||||| ||||| Sbjct 10324 CGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGAGGTGCGAAAGCATGGGGAGCGAACAG 10265 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||||||||| ||| |||||||| Sbjct 10264 GATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 10230 >seq32979 Length=37524 Score = 172 bits (190), Expect = 1e-40 Identities = 239/335 (71%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| ||||||| |||| ||||||||| ||| ||| Sbjct 23985 TATCTGGCGAATAAGCATCGGCTAACTCTGTGCCAGTAGCCACGGTAATACAGAGGATGC 23926 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| ||||| | ||||||||| || | | ||| || | | |||| | | || Sbjct 23925 AAGCGTTATCCGGAACGATTGGGCGTAATGCTTTTGTAGGTGGCTTTTTAAGTCCGTCGT 23866 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| |||| |||| ||| || | | ||| | || |||| | || Sbjct 23865 CAAATCCCAAGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 23806 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| || ||| ||||||||| |||| || | | ||||||||| || Sbjct 23805 GGCAGAAGGAATTTTCGGTAGAGCGGTGAAATGCATAGAGATCGGAAAGAACACCAACGG 23746 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| || | ||||| ||||||| || | |||||||| ||||||| || | Sbjct 23745 CGAAAACACTCTGCTGGGCCGACACTGATACTAAGAGACGAAAGCTAGGGGAGCGAATGG 23686 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||| ||||||| ||| |||||||| Sbjct 23685 GATTAGATACCCTAGTAGTCCTAGCCGTAAACGAT 23651 >seq33745 Length=118278 Score = 109 bits (120), Expect = 1e-21 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| |||||||||||||| || | | ||||||||| |||||| || Sbjct 3937 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 3878 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||| | |||||||| || | |||||||| ||||||| || |||||||| Sbjct 3877 ACTCTGCTGAGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGA 3818 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||| ||||||| ||| |||||||| Sbjct 3817 TACCCCAGTAGTCCTAGCCGTAAACGAT 3790 >seq28377 Length=6645 Score = 109 bits (120), Expect = 1e-21 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| || ||||||||||| || | | ||||||||| |||||| || Sbjct 3514 GGAATTTCCGGTGGAGCGGTTAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 3573 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | |||| |||||||| || | |||||||| |||||| || |||||||| Sbjct 3574 ACTCTGCTGGACCGACACTGACACTGAGAGACGAAAGCTAAGGGAGCGAATGGGATTAGA 3633 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG- 368 ||||| ||||||| ||| ||||| || ||||| | || | | | || || Sbjct 3634 TACCCCAGTAGTCCTAGCCGTAAACAATGGATACTAGGCGCTGTGCGTATCGACCCGTGC 3693 Query 369 -GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || ||||||||||||| ||||| ||||||| ||| ||| Sbjct 3694 AGTGCTGTAGCTAACGCGTTAAGTTTCCCGCCTGAGGAGTAC 3735 >seq33354 Length=58814 Score = 105 bits (116), Expect = 2e-20 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 212 AATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGAC 271 |||||||||| || | | ||||||||| |||||| ||| | ||||| |||||||| Sbjct 48195 AATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGAC 48136 Query 272 GCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTA 331 || | |||||||| ||||||| || ||||||||||||| ||||||| ||| || Sbjct 48135 ACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTA 48076 Query 332 AACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG--GTAACGTAGCTAACGCGTGAA 389 || ||| ||||| |||| | | | || || | | | ||||||||||| || Sbjct 48075 AATGATGGATACTAGGCGTTGTGCGTATCAACCCATGCAATGATGCAGCTAACGCGTTAA 48016 Query 390 GTTGACCGCCTGGGGAATAC 409 || ||||||||||| ||| Sbjct 48015 GTATCCCGCCTGGGGAGTAC 47996 >seq34189 Length=425456 Score = 82.4 bits (90), Expect = 2e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 26 AACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGG 85 |||| |||||||||||||||||||||| | | ||||||||||| |||||| | |||| Sbjct 151013 AACTCTGTGCCAGCAGCCGCGGTAATACAGAAGATGCAAGCGTTATCCGGAATGATTGGG 150954 Query 86 CGTAAAGCGT 95 |||||||||| Sbjct 150953 CGTAAAGCGT 150944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1288601849600