Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq27302 152 7e-35 seq32976 120 4e-25 seq33526 113 6e-23 seq34367 91.5 2e-16 seq33959 87.8 2e-15 seq34439 86.0 9e-15 seq33621 84.2 3e-14 >seq27302 Length=20257 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 9349 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 9291 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 9290 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 9233 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 9232 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 9182 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 9181 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 9122 Query 246 GTA 248 ||| Sbjct 9121 GTA 9119 >seq32976 Length=53184 Score = 120 bits (132), Expect = 4e-25 Identities = 165/230 (72%), Gaps = 22/230 (10%) Strand=Plus/Plus Query 19 GGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTA 78 |||||||||||| || |||||| | ||||| | ||| || || ||||||||| ||| Sbjct 32867 GGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGAATACTTGTGTTTTTTGTA 32925 Query 79 AACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCA 138 ||||||||| | || || |||| ||| || | || || | Sbjct 32926 AACAGTCGCCTAGGCCTGGTCACTGCAACCCCCT-------------TTGTG----AGGA 32968 Query 139 GTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCA 198 | ||||||||||||||||||||||||||| |||||||||| ||||||| | |||| Sbjct 32969 G--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA--GAGAGTTAT 33024 Query 199 CCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 33025 CTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCAGGTA 33074 >seq33526 Length=106406 Score = 113 bits (124), Expect = 6e-23 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| ||||||||||| |||||| || |||| | | Sbjct 46006 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTTGACATGGTTCTCTC 45947 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | ||||||||||| |||||| || ||||||||||| ||| |||| Sbjct 45946 AAGCGCCTTAGTATACTCTACTTGTTCACCTGTGTCGATTTGGGGTA 45900 >seq34367 Length=185625 Score = 91.5 bits (100), Expect = 2e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||| |||||||||| ||||||| || || |||| | |||| | Sbjct 171069 GGCACCCCTTCTCCCGATGTTACGGGGCTATTTTGCTGAGTTTCTTAGAGAGAGTTGTCT 171010 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || ||| ||||||||||||| ||||||||||||||| |||| Sbjct 171009 CGTGTCCCTAGGTATTCTCTACCTACTCACCTGTGTCGGTTTCTGGTA 170962 >seq33959 Length=71220 Score = 87.8 bits (96), Expect = 2e-15 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||| ||||||||||| ||||||||| | ||||| || |||| | Sbjct 36464 GGCACCCCTTCTCCCAAAGTTACGGGGTCATTTTGCCAAGCTCCTTCGACATGGTTCTCT 36405 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | |||| |||| | |||||| || ||||||||| || || |||| Sbjct 36404 CAAGCGCCCTAGTTTACTCTACTTGTTCACCTGTGTTGGCTTGGGGTA 36357 >seq34439 Length=237398 Score = 86.0 bits (94), Expect = 9e-15 Identities = 72/87 (83%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | |||| || ||| ||| Sbjct 11688 CTTAACCTTCCGACACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCAG 11746 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGC 87 ||||||||||||| |||||||||||| Sbjct 11747 AGACCTGTGTTTTTGGTAAACAGTCGC 11773 >seq33621 Length=162105 Score = 84.2 bits (92), Expect = 3e-14 Identities = 158/231 (68%), Gaps = 25/231 (11%) Strand=Plus/Minus Query 18 GGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGT 77 ||||||||||||| || |||||| | |||| | ||| || ||||||||||||| || Sbjct 1914 GGGCAGGCGTCAGCCCCCATACATGGTTTTAC-GACTTTGCGGAGACCTGTGTTTTTGGT 1856 Query 78 AAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGC 137 |||||||||| || || |||| | | || | || || Sbjct 1855 AAACAGTCGCCCGGGCCTGATCACTGCAATCCCCT-------------TTGTG----AGG 1813 Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197 || ||||||||||||||||||||||||||| ||||||| || ||| ||| | |||| Sbjct 1812 AG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCTGAGTTCTTTAGAGAGAGTTG 1755 Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | || | ||| ||||||||||| | ||| || ||||||| |||| Sbjct 1754 TCTCGCGCCCCTAGGTATTCTCTACGT-ACC----GTATCGGTTTCGGGTA 1709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693879330200