Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq33526 86.0 7e-15 seq27302 86.0 7e-15 seq32976 80.6 3e-13 seq33621 78.8 1e-12 seq34367 75.2 1e-11 >seq33526 Length=106406 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 |||| |||||| || | || || |||||||||||||||||| ||| || | ||| Sbjct 45905 CAAATCGACACAGGTGAACAAGTAGAGTATACTAAGGCGCTTGAGAGAACCATGTCAAAG 45964 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 45965 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 46004 >seq27302 Length=20257 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 9124 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 9183 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 9184 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 9223 >seq32976 Length=53184 Score = 80.6 bits (88), Expect = 3e-13 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTTAAG 83 |||| |||||| || | ||| || |||| ||| || ||| || || | |||| Sbjct 33068 AAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGATAACTCTC---TAAG 33012 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || || Sbjct 33011 GAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGGGG 32954 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACA 184 |||| || ||| | |||| |||||||| ||||||||| Sbjct 32953 TTGCAGTGACCAGGCCTAGGCGACTGTTTACAAAAAACACA 32913 >seq33621 Length=162105 Score = 78.8 bits (86), Expect = 1e-12 Identities = 84/110 (76%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||| ||||| ||||| | ||| |||||||||||| || |||| ||| | || ||| || Sbjct 1765 TAAAGAACTCAGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGG 1824 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || |||| || ||| || ||| |||||||| |||||||||||| || Sbjct 1825 GA--TTGCAGTGATCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 1872 >seq34367 Length=185625 Score = 75.2 bits (82), Expect = 1e-11 Identities = 83/110 (75%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 |||| |||| ||||| | ||| ||||| |||||| || |||| ||| | || ||| || Sbjct 171023 TAAGAAACTCAGCAAAATAGCCCCGTAACATCGGGAGAAGGGGTGCCTCCTCACAAAGGG 171082 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | |||| || ||| || ||| |||||||| |||||||||||| || Sbjct 171083 G--GTTGCAGTGATCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 171130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530801699600