Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq27302 248 2e-63 seq32976 214 5e-53 seq34439 201 3e-49 seq31233 147 6e-33 seq33959 134 3e-29 seq32307 104 6e-20 seq32314 89.7 1e-15 seq33526 84.2 6e-14 >seq27302 Length=20257 Score = 248 bits (274), Expect = 2e-63 Identities = 302/412 (73%), Gaps = 21/412 (5%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 9535 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 9476 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 9475 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 9416 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||||| || | || Sbjct 9415 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 9362 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 9361 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 9302 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 9301 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 9242 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 9241 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 9197 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 9196 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 9145 >seq32976 Length=53184 Score = 214 bits (236), Expect = 5e-53 Identities = 303/423 (72%), Gaps = 36/423 (9%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || |||||| ||| ||| ||||||| ||| |||||| Sbjct 32661 GCATCTTCACAGACATGTCTATTTCATCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 32720 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||| ||| |||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 32721 ACGCCTTTCCTGCGGGTCGGAACTTACC-GACAAGGAATTTCGCTACCTTAGGACCATTA 32779 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTAGC---TAACCC 188 | |||||| |||||||| |||| ||||||| | |||| | | || | | | ||| Sbjct 32780 TAGTTACGACCGCCGTTCACCGAGGCTTCGGTTGCTAGCTCCCCTGTCATCAAGTCACCA 32839 Query 189 CATCAATTAACCTTCCGGCAC----CGGGCAGGCGTCACACCCTATACGTCCACTTTCGT 244 | |||||| ||||||||| | ||||||||||| ||| |||| | ||| || Sbjct 32840 ACTTCATTAACATTCCGGCACTAGGCAGGCAGGCGTCAGCCCCCATACATGGTCTTACGA 32899 Query 245 GTTTGCAGAGTGC-TGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGC 303 ||||| || | | ||||||||| ||||||||||| |||||||| || | ||| Sbjct 32900 CTTTGC-GAATACTTGTGTTTTTTGTAAACAGTCGCCTAGGCCTGGTCACTGCAACC--- 32955 Query 304 ATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTG 363 ||| ||| | ||| | ||||||||||||||||||| | Sbjct 32956 ---CCCTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGG 32995 Query 364 CCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAAC 423 | ||||||| |||||||| ||||| |||| || ||| ||||||||||||| | | Sbjct 32996 CTATTTTGCCGAGTTCCTT--AGAGAGTTATCTCGCGCCCCTAGGTATTCTCTACCTACC 33053 Query 424 CAC 426 ||| Sbjct 33054 CAC 33056 >seq34439 Length=237398 Score = 201 bits (222), Expect = 3e-49 Identities = 215/282 (76%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||| || || || ||||||| | | ||| ||||| | ||| |||||| Sbjct 11506 GCATCTT---AGACATGTCTATTTCACCGGGCCTCTCTCCGAGACCGTGCCCAGATCGTT 11562 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11563 ACGCCTTCCATGCTGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 11622 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| ||| ||||||| || ||| | | | || | ||| Sbjct 11623 TAGTTACGGCCGCCGTTCACCCGGGCTTCAGTCGCCGGCTCCCCTGTCATCAGGTCACCA 11682 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | ||||||||||| ||| |||||||||||| ||| |||| | ||| || ||| Sbjct 11683 ACTTCCTTAACCTTCCGACACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 11742 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290 |||||| |||||||||| ||||||||||| | |||||||| Sbjct 11743 GCAGAGACCTGTGTTTTTGGTAAACAGTCGCCG-GGCCTGGT 11783 >seq31233 Length=37583 Score = 147 bits (162), Expect = 6e-33 Identities = 90/96 (94%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 21078 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 21137 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCG 162 |||||| ||||| ||||||||| |||||||||||| Sbjct 21138 TCGTTATAGTTACAGCCGCCGTTCACCGGGGCTTCG 21173 >seq33959 Length=71220 Score = 134 bits (148), Expect = 3e-29 Identities = 280/413 (68%), Gaps = 23/413 (6%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | ||||||||||| || |||||||||| | |||| | |||||||| | || Sbjct 36773 TACTCCGCATCTTCACAAAGAATTCAATTTCATCGGGTCTATGTGGGAGACAGTGGGGCA 36714 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||| | ||||| ||||| |||||||||||||||||||||||||| Sbjct 36713 GTCGTTACACCATTCATATAGGTCACTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 36654 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 |||| ||||| |||| |||| || |||||| || | ||||| | | | | Sbjct 36653 TAGTTAGAGTTACTATCGCCATTTATCGAGGCTTCCATTCAAAGCTT---ATAACATTTC 36597 Query 187 CCCATCAATTAACCTTCC-GGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 245 || || | ||||| |||| |||| | |||| || |||||| | || | Sbjct 36596 TCCTTC---CGAGCTTCCAAACACCAGGCATGTGTCAGACTCTATACATTGTGTTACCAC 36540 Query 246 TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCAT 305 || ||||||| | ||||||||||||| || |||| | | || ||| | | Sbjct 36539 TTAGCAGAGTCCCGTGTTTTTAATAAGCAATCGCCAC-CCTTGCTATGTGC--------- 36490 Query 306 GAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCC 365 |||| | | | | | | | ||| | ||||||||| ||||||||| | | Sbjct 36489 -TGCTTTC----CTAAT-CAAAAGATTGGAGGGCACCCCTTCTCCCAAAGTTACGGGGTC 36436 Query 366 TTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| || |||||| | ||||||||||||||| | || | |||||| Sbjct 36435 ATTTTGCCAAGCTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTTTACTCTAC 36383 >seq32307 Length=55423 Score = 104 bits (114), Expect = 6e-20 Identities = 145/199 (73%), Gaps = 16/199 (8%) Strand=Plus/Minus Query 107 GGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCA 166 ||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| ||| Sbjct 34440 GGAATTTCGTTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCA 34381 Query 167 ------AG--AGCTTCGC-GTTAGC-TAACCCCATCAA-----TTAACCTTCCGGCACCG 211 || | || | | || | | | | || ||| |||||||| ||||| | Sbjct 34380 CCGACTAGCCAACTCCCCTGTCATCATCAGGTCACCAACTTCGTTAACCTTTTGGCACTG 34321 Query 212 GGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAA 271 || |||||||| ||| ||| | ||| || |||| ||| |||||||||| ||| Sbjct 34320 GGTAGGCGTCA-TCCCGTTACATGGTCTTACGACCTTGCGGAGACCTGTGTTTTTGGTAA 34262 Query 272 ACAGTCGCAGCGGCCTGGT 290 |||||||| ||| |||| Sbjct 34261 ACAGTCGCCCAGGCTTGGT 34243 >seq32314 Length=57355 Score = 89.7 bits (98), Expect = 1e-15 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | ||||||||| || Sbjct 27008 TACGCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCAGGGCA 27067 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAA 110 ||||||| |||||||||||||||| ||||| |||||||||| Sbjct 27068 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAA 27111 >seq33526 Length=106406 Score = 84.2 bits (92), Expect = 6e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| | | ||||||| |||||||| | ||||||||||||| Sbjct 46001 CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTTGACATGGTTCTCTCAAGCG 45942 Query 403 CCTTGGTATTCTCTAC 418 |||| |||| |||||| Sbjct 45941 CCTTAGTATACTCTAC 45926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1259824140800