Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq32976 273 5e-71 seq27302 273 5e-71 seq34439 253 4e-65 seq33959 167 5e-39 seq31233 161 2e-37 seq33621 143 6e-32 seq34367 127 4e-27 seq32307 123 5e-26 seq33326 91.5 3e-16 seq33526 78.8 2e-12 >seq32976 Length=53184 Score = 273 bits (302), Expect = 5e-71 Identities = 278/357 (78%), Gaps = 13/357 (4%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||| |||| || | ||||||||||||| |||||| Sbjct 32661 GCATCTTCACAGACATGTCTATTTCATCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 32720 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 32721 ACGCCTTTCCTGCGGGTCGGAACTTA-CCGACAAGGAATTTCGCTACCTTAGGACCATTA 32779 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 |||||||| |||||||| || | ||||| ||| ||| | | | || | || Sbjct 32780 TAGTTACGACCGCCGTTCACCGAGGCTTCGGTTGCTAGCTCCCCTGTCATCAAGTCACCA 32839 Query 183 ATCCCCTTAACCTTCCAGCAC----CGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | | ||||| |||| |||| | ||||||||||||| || |||||| ||||| ||| Sbjct 32840 ACTTCATTAACATTCCGGCACTAGGCAGGCAGGCGTCAGCCCCCATACATGGTCTTACGA 32899 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG---CGGCCT 295 ||| || | || ||||||||| |||||||||||| | ||||| || ||| | ||| Sbjct 32900 CTTTGCGAATACTTGTGTTTTTTGTAAACAGTCGCCTAGGCCTGGTCACTGCAACCCCCT 32959 Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 32960 TTGTGAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 33015 >seq27302 Length=20257 Score = 273 bits (302), Expect = 5e-71 Identities = 286/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 9535 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 9476 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 9475 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 9416 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 9415 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 9364 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 9363 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 9304 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 9303 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 9244 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 9243 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 9184 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 9183 CTTCGACATGGTTCTC 9168 >seq34439 Length=237398 Score = 253 bits (280), Expect = 4e-65 Identities = 219/268 (82%), Gaps = 5/268 (2%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 ||||||||| | || | ||||| ||||||| ||||||||||||| | ||| |||||| Sbjct 11523 ATTTCACCGGGCCTCTCTCCGAGACCGTGCCCAGATCGTTACGCCTTCCATGCTGGTCGG 11582 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 11583 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 11642 Query 147 TGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAGATCCCCTTAACCTTCCAGCA 202 |||||| ||| | ||| | | | || | || | |||||||||||| || Sbjct 11643 CCGGGCTTCAGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGACA 11702 Query 203 CCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGG 262 | |||||||||||||| || |||||| ||||| |||||| ||||| |||||||||||||| Sbjct 11703 CTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCAGAGACCTGTGTTTTTGG 11762 Query 263 TAAACAGTCGCTTGGGCCTATTCTCTGC 290 ||||||||||| |||||| || |||| Sbjct 11763 TAAACAGTCGC-CGGGCCTGGTCACTGC 11789 >seq33959 Length=71220 Score = 167 bits (184), Expect = 5e-39 Identities = 267/379 (70%), Gaps = 26/379 (7%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| || | |||||||| || |||||| ||||||||| | Sbjct 36773 TACTCCGCATCTTCACAAAGAATTCAATTTCATCGGGTCTATGTGGGAGACAGTGGGGCA 36714 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||| | |||| ||||| |||||||||||||||||||||||||| Sbjct 36713 GTCGTTACACCATTCATATAGGTCACTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 36654 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||| |||||| |||| |||| | ||||| |||| ||| | |||| Sbjct 36653 TAGTTAGAGTTACTATCGCCATTTATCGAGGCTTCCATTCAAAGCT--------TATAAC 36602 Query 181 AGATCCCCTT--AACCTTCC-AGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCG 237 | || |||| | ||||| | |||| |||| | ||||| |||||||| || || | Sbjct 36601 ATTTCTCCTTCCGAGCTTCCAAACACCAGGCATGTGTCAGACTCTATACATTGTGTTACC 36542 Query 238 ACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCG-----CTTGGGCCTATTCTCTGC-G 291 |||||||||| || |||||||| ||| || ||| |||| |||| |||| Sbjct 36541 ACTTAGCAGAGTCCCGTGTTTTTAATAAGCAATCGCCACCCTTG---CTATGTGCTGCTT 36485 Query 292 GCCT-GTC-----ATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAG 345 ||| || || | ||||||||||||||| ||||||||||||||||||||| || Sbjct 36484 TCCTAATCAAAAGATTGGAGGGCACCCCTTCTCCCAAAGTTACGGGGTCATTTTGCCAAG 36425 Query 346 TTCCTTAACAATAGTTCTC 364 ||||| || |||||| Sbjct 36424 CTCCTTCGACATGGTTCTC 36406 >seq31233 Length=37583 Score = 161 bits (178), Expect = 2e-37 Identities = 97/102 (95%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 53 GTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 112 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21070 GTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTA 21129 Query 113 CCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 |||||||| |||||||||||| ||||||||| || ||||||| Sbjct 21130 CCTTAGGATCGTTATAGTTACAGCCGCCGTTCACCGGGGCTT 21171 >seq33621 Length=162105 Score = 143 bits (158), Expect = 6e-32 Identities = 132/165 (80%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 191 AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAAC 250 ||||||| ||| |||||||||||||| || |||||| || || |||||| || || || Sbjct 1928 AACCTTCTGGCATTGGGCAGGCGTCAGCCCCCATACATGGTTTTACGACTTTGCGGAGAC 1869 Query 251 CTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGC---GGCCTGTCATAGACAGG 307 ||||||||||||||||||||||| |||||| || |||| ||| | || ||| Sbjct 1868 CTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGATCACTGCAATCCCCTTTGTGAG-GAGG 1810 Query 308 CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||||||||||||| ||||||||||| ||||||| |||||| ||| Sbjct 1809 CACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCTGAGTTCTTTA 1765 >seq34367 Length=185625 Score = 127 bits (140), Expect = 4e-27 Identities = 130/168 (77%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 188 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGA 247 ||||||||||| ||| || || || ||| | || |||||| |||| |||||| | || Sbjct 171189 CTTAACCTTCCGACACTGGACATGCATCAACCCCCATACATGATCTTACGACTTTGTGGA 171130 Query 248 AACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG---CGGCCTGTCATAGAC 304 ||||||||||||||||||||||||| |||||| || ||| | ||| | || Sbjct 171129 GACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGATCACTGCAACCCCCTTTGTGAG-G 171071 Query 305 AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||||||||| | ||||||||| ||||||| ||||| |||| Sbjct 171070 AGGCACCCCTTCTCCCGATGTTACGGGGCTATTTTGCTGAGTTTCTTA 171023 >seq32307 Length=55423 Score = 123 bits (136), Expect = 5e-26 Identities = 143/189 (76%), Gaps = 18/189 (10%) Strand=Plus/Minus Query 101 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTC 160 ||||||||| ||||||||||||||||||||||||||||||||| || ||||||| | || Sbjct 34440 GGAATTTCGTTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTT-CGGTC 34382 Query 161 ACTG-CT--TCGATTGCTCT------AACAGATCCCC-------TTAACCTTCCAGCACC 204 || | || | | | | || | ||| || || |||||||| |||| Sbjct 34381 ACCGACTAGCCAACTCCCCTGTCATCATCAGGTCACCAACTTCGTTAACCTTTTGGCACT 34322 Query 205 GGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTA 264 ||| |||||||| | || ||||| ||||| |||| | || || |||||||||||||||| Sbjct 34321 GGGTAGGCGTCATC-CCGTTACATGGTCTTACGACCTTGCGGAGACCTGTGTTTTTGGTA 34263 Query 265 AACAGTCGC 273 ||||||||| Sbjct 34262 AACAGTCGC 34254 >seq33326 Length=68004 Score = 91.5 bits (100), Expect = 3e-16 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||||||||||| |||| |||||| ||||||| || |||| ||||| |||||| || | Sbjct 42248 CCTTAACCTTCCGGCACTGGGCAGCCGTCAGCCCCCCAACATGGTCTTACGACTTTGCGG 42307 Query 247 AAACCTGTGTTTTTGGTAAA 266 | |||||||||||||||||| Sbjct 42308 AGACCTGTGTTTTTGGTAAA 42327 >seq33526 Length=106406 Score = 78.8 bits (86), Expect = 2e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||| |||||||||||||||||||||||||||||| || |||||| Sbjct 46006 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTTGACATGGTTCTC 45949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061577702400