Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq28377 257 5e-66 seq34169 215 2e-53 seq18355 199 1e-48 seq2810 167 7e-39 seq32332 147 7e-33 seq33354 116 1e-23 seq34399 114 4e-23 seq34409 104 7e-20 seq32918 102 2e-19 seq34264 80.6 8e-13 seq34419 77.0 1e-11 >seq28377 Length=6645 Score = 257 bits (284), Expect = 5e-66 Identities = 232/289 (80%), Gaps = 5/289 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||| | |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 3733 TACGTTCGCACGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 3792 Query 61 GTGGTTTAATTCGA---AGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCC 117 |||||||||||||| |||| |||||||||||||||| |||| ||| | || | Sbjct 3793 GTGGTTTAATTCGATGCNGCAAAGCGAAGAACCTTACCAGGGCTTGCCATGCCGCGAATC 3852 Query 118 CTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGT 177 |||| || | ||||| | || |||||| || | ||| ||| |||||||||||||| Sbjct 3853 CTCTTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAAGTGGTGCATGGTTGTCGT 3910 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGT 237 ||||||||| ||| || |||||||| |||||||||||||| ||||||||| | ||||| Sbjct 3911 CAGCTCGTGCCGTAAGGTGTTGGGTGAAGTCCCGCAACGAACGCAACCCTCGTGTTTAGT 3970 Query 238 TGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGG 286 ||||||| || |||| || || || | |||||||||||| || |||| Sbjct 3971 TGCCATCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGG 4019 >seq34169 Length=267420 Score = 215 bits (238), Expect = 2e-53 Identities = 199/251 (79%), Gaps = 1/251 (0%) Strand=Plus/Minus Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305 || |||| || || || | |||||||||||| || ||||||||||||| ||| ||||| Sbjct 187601 TTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGT 187542 Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| ||||||||||||||||| ||||| |||||||||||||||||| | ||||||| Sbjct 187541 CAAGTCATCATGCCCCTTATGTCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGG 187482 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 | |||| |||||||| ||| || |||| ||| | |||||||| ||||| || | Sbjct 187481 GTTGCGATCCCGCGAGGGTGAGCTAACCCCAAAAATCCATCCTCAGTTCAGATTGCAGGC 187422 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTG 484 ||||||||| || ||||| | |||||||||||||| ||| | |||| ||| | ||||| Sbjct 187421 TGCAACTCGCCTGCATGAATCCGGAATCGCTAGTAACCGTCGGTCAGCCATACGGCGGTG 187362 Query 485 AATACGTTCCC 495 ||| ||||||| Sbjct 187361 AATTCGTTCCC 187351 >seq18355 Length=20809 Score = 199 bits (220), Expect = 1e-48 Identities = 196/250 (78%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 255 GCACTC--TAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCA 312 |||||| |||| ||||||| |||| | || ||||||||||||||| |||||||| || Sbjct 263 GCACTCACTAAG--GACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCC 320 Query 313 TCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGA 372 |||| |||||||| ||||| |||||||||||||||||| | ||||| ||| ||| | Sbjct 321 GCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAA 380 Query 373 AACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACT 432 | | ||| ||| ||| || |||| | ||||||||||||||| ||||||||| Sbjct 381 GGCTGTAAGGCGGAGCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACT 439 Query 433 CGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTT 492 || | |||||| |||||||||||||||||| ||||||||||| ||||||||| || Sbjct 440 CGGGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTA 499 Query 493 CCCGCTCCCT 502 |||| |||| Sbjct 500 CCCGGGCCCT 509 >seq2810 Length=20389 Score = 167 bits (184), Expect = 7e-39 Identities = 179/234 (76%), Gaps = 17/234 (7%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 10162 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 10103 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| | Sbjct 10102 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA----AC 10050 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 ||| | | | ||| ||| || || | | ||||||| ||||||| || Sbjct 10049 AAGA---AAACCTGTCCTTAACGGGATGGTACTTACTTTCATACAGGTGCTGCATGGCTG 9993 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 9992 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 9939 >seq32332 Length=119355 Score = 147 bits (162), Expect = 7e-33 Identities = 194/267 (73%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 145 GGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGAT----GTTGG 200 || ||| || |||||| ||||||||||| |||| |||||| ||| |||| ||||| Sbjct 49745 GGAACACAGGCACAGGTAGTGCATGGTTGTTGTCAACTCGTGCCGTAAGATATATGTTGG 49804 Query 201 GTTAAGTCCCGCAACGAGCG---CAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCA 257 ||||||||| ||||| ||| ||| | | | ||||||| ||| | || |||| | Sbjct 49805 GTTAAGTCCTGCAACAAGCTGCACAATCTTCGTGTTTAGTTGTCATGTTGAATTTGGA-A 49863 Query 258 CTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATG 317 | |||| | ||| || |||| || | || |||| |||||| |||||||| | |||||| Sbjct 49864 CCCTAAATAAACTACCAGTGATAAGCTGGGGGAAAGTGGGGCTGACGTCAAGTTATCATG 49923 Query 318 CCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCG 377 |||| |||| | ||| ||||| ||||||||||| ||||| || |||| |||| Sbjct 49924 CCCCCTATGTCCTAGGCGGCACACATGCTACAATGGCTGGGACAAAAGGTTGCGATACCG 49983 Query 378 CGAGGTCAAGCAAATCCCATAAAGTTG 404 | ||| ||| || |||| |||| || Sbjct 49984 CAAGGGTGAGCTAACCCCAAAAAGCTG 50010 >seq33354 Length=58814 Score = 116 bits (128), Expect = 1e-23 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||| | ||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 47998 TACGTTCGCACGAATGAAACTCAAAAAAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 47939 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAAC 89 |||||||||||||| |||| ||||||||| Sbjct 47938 GTGGTTTAATTCGATGCAAAGCGAAGAAC 47910 >seq34399 Length=253741 Score = 114 bits (126), Expect = 4e-23 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 266 TGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTAT 325 ||||||||||||| || ||||||||||||| ||| |||||||| |||||||||||||||| Sbjct 115161 TGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTAT 115220 Query 326 GATTTGGGCTACACACGTGCTACAATGG 353 ||||| |||||||||||||||||| Sbjct 115221 ACCCTGGGCGACACACGTGCTACAATGG 115248 >seq34409 Length=176022 Score = 104 bits (114), Expect = 7e-20 Identities = 121/162 (75%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 336 ACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCC 395 |||||||||||||||||| | |||||||| || | || ||||| | | || ||| Sbjct 76764 ACACACGTGCTACAATGGCCGGGACAAAGGGTCGCAATCCCACGAGGGTGACCTAACCCC 76823 Query 396 ATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGC 455 | ||| | ||||||| |||||| || |||||| ||| || ||||||| ||||| | Sbjct 76824 AAAAATCCATCCTCAGTTTGGATTGCAGCCTGCAATTCGCCTGCATGAAGCCAGAATCAC 76883 Query 456 TAGTAATCGTAGATCAGC-ATGCTACGGTGAATACGTTCCCG 496 |||||||| | ||| | || | ||||||||| |||||||| Sbjct 76884 TAGTAATCACCGGTCAACTATACAACGGTGAATTCGTTCCCG 76925 >seq32918 Length=102999 Score = 102 bits (112), Expect = 2e-19 Identities = 177/257 (69%), Gaps = 14/257 (5%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||| ||||||||||||||| || |||||||||| | || | |||| |||||| ||||| Sbjct 85046 ACATGTGATGCATGGTTGTTGTTAGCTCGTGTCCTAAG--GCCGGGTGAAGTCCTGCAAC 85103 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 ||||| |||||| | |||||||| ||| || |||| | |||| | | | | | Sbjct 85104 GAGCGTAACCCTCGTGTTTAGTTGCTATCGTTGAGTTTGCAACTCAGAACAAATTATCAG 85163 Query 276 TGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCT 335 ||| || |||||||||| ||| || | || | ||||||||| | ||| Sbjct 85164 TGATAAGTTAGAGGAAGGTGAGGATGATGCCAGGTTATCATGCCC---------TAGGCG 85214 Query 336 ACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCC 395 || || |||||||||||| ||||| || | || ||| |||| || | |||| Sbjct 85215 ACCCATGTGCTACAATGGCTGGGACAAAAGGTCGTGATCCCGTGAGG---GGCTATTCCC 85271 Query 396 ATAAAGTTGTTCTCAGT 412 ||| ||||||||| Sbjct 85272 GAAAATCCGTTCTCAGT 85288 >seq34264 Length=130086 Score = 80.6 bits (88), Expect = 8e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74 |||||||||||||||||||||| || | | |||||||||||||||||||||||||| Sbjct 67766 TGAAACTCAAAGGAATTGACGGTGATGGGGGCCCGCGGTGGAGCATGTGGTTTAATTCGA 67707 Query 75 AGCAACGCGAAG 86 |||| | |||| Sbjct 67706 TGCAAAGTGAAG 67695 >seq34419 Length=564869 Score = 77.0 bits (84), Expect = 1e-11 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 17 AAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAG 76 ||||| |||| |||||||| | | |||||||||||||||||||||| |||||||| | Sbjct 483548 AAACTTAAAGAAATTGACGATGGCATGCACAAGCGGTGGAGCATGTGGGCTAATTCGATG 483489 Query 77 CAACGCGAAGAACCTTA 93 ||| || | || ||||| Sbjct 483488 CAAAGCAATGACCCTTA 483472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1502835904000