Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq7490 250 4e-64 seq5456 248 1e-63 seq10259 232 1e-58 seq1082 226 5e-57 seq3751 215 9e-54 seq6271 212 1e-52 seq4625 179 6e-43 seq8902 165 1e-38 seq10269 140 6e-31 seq6530 136 7e-30 seq34122 129 1e-27 seq23926 118 2e-24 seq11852 100 5e-19 seq28523 91.5 3e-16 seq12834 91.5 3e-16 >seq7490 Length=2671 Score = 250 bits (276), Expect = 4e-64 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 68 CTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGC 127 ||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||| Sbjct 2671 CTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGC 2612 Query 128 TTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 187 ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2611 TTCACAATGATAGGAAGAGCCCACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 2552 Query 188 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 |||||||||||||||||||||||||||||||||||||||| || Sbjct 2551 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACA 2509 >seq5456 Length=2652 Score = 248 bits (274), Expect = 1e-63 Identities = 152/162 (94%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 44 AAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 AAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAAC 60 Query 104 AATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 |||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||| Sbjct 61 AATCCAACACTTGGTGAATTGTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCA 120 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 |||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 162 >seq10259 Length=2703 Score = 232 bits (256), Expect = 1e-58 Identities = 149/163 (91%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158 ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| Sbjct 1 TGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAG 60 Query 159 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 61 GATCAAAAAGCAACGTCGCTACGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 120 Query 219 ACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGG 261 ||||||||| |||||||||| || |||| ||| || ||||||| Sbjct 121 ACTTTTCTGACACCTCTAGCTTCGAATTCCGAAGGTCTAAAGG 163 >seq1082 Length=10195 Score = 226 bits (250), Expect = 5e-57 Identities = 148/163 (91%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 TTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGATATG 60 Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTC 241 ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | Sbjct 61 AACGCTTGGCTGCCACAAGCCCGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTT 120 Query 242 AAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284 |||| ||| || ||||||||||| |||||||| |||||| || Sbjct 121 GAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGG 163 >seq3751 Length=2625 Score = 215 bits (238), Expect = 9e-54 Identities = 134/144 (93%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| Sbjct 2623 GACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAA 2564 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 || |||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2563 TTTTGCTTCACAATGATAGAAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 2504 Query 182 AACGCTTGGCTGCCACAAGCCAGT 205 |||||||||||||||||||||||| Sbjct 2503 AACGCTTGGCTGCCACAAGCCAGT 2480 >seq6271 Length=2659 Score = 212 bits (234), Expect = 1e-52 Identities = 132/142 (93%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 144 GAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 142 GAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 83 Query 204 GTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGAT 263 ||||||||||||||||||||||| |||||||||| || |||| ||| || ||||||||| Sbjct 82 ATTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCGAATTCCGAAGGTCTAAAGGAT 23 Query 264 CGATAGGCCACACTTTCATGGT 285 || |||||||| |||||| ||| Sbjct 22 CGTTAGGCCACGCTTTCACGGT 1 >seq4625 Length=2642 Score = 179 bits (198), Expect = 6e-43 Identities = 114/124 (92%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGC 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 160 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGAC 101 Query 230 ACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGT 289 ||||||||| || |||| ||| || ||||||||||| |||||||| |||||| |||| || Sbjct 100 ACCTCTAGCTTCGAATTCCGATGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGT 41 Query 290 ATTC 293 |||| Sbjct 40 ATTC 37 >seq8902 Length=2687 Score = 165 bits (182), Expect = 1e-38 Identities = 120/138 (87%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 2551 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 2609 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||| |||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 2610 CGACGATCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 2669 Query 121 ATTCTGCTTCGGTATGAT 138 |||||||||| ||||| Sbjct 2670 ATTCTGCTTCACAATGAT 2687 >seq10269 Length=2704 Score = 140 bits (154), Expect = 6e-31 Identities = 96/107 (90%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | || ||||||||||||||||||||||||||||||| Sbjct 106 TACTAGGTTGAATTACTATTGCGAA-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 48 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATC 107 ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 47 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATC 1 >seq6530 Length=2662 Score = 136 bits (150), Expect = 7e-30 Identities = 78/80 (98%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 158 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 99 Query 222 TTTCTGGCACCTCTAGCCTC 241 |||||| |||||||||| || Sbjct 98 TTTCTGACACCTCTAGCTTC 79 >seq34122 Length=150556 Score = 129 bits (142), Expect = 1e-27 Identities = 94/108 (87%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 186 CTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT 245 |||||||||||||| |||||||| | |||| ||||||||||| |||||||||| || ||| Sbjct 20118 CTTGGCTGCCACAAACCAGTTATTCATGTG-TAACTTTTCTGACACCTCTAGCTTCGAAT 20176 Query 246 TTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| | ||||||||||| || ||||||||||||||||| ||||| Sbjct 20177 TTCGAAAGTCTAAAGGATCGTTAAGCCACACTTTCATGGTTCATATTC 20224 >seq23926 Length=22393 Score = 118 bits (130), Expect = 2e-24 Identities = 76/82 (93%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 11 AATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 |||||| |||| | | || ||||||||||||||||||||||||||||||| ||||||||| Sbjct 19713 AATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTA 19655 Query 71 AACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||| Sbjct 19654 AACCCAGCTCACGTTCCCTATT 19633 >seq11852 Length=2728 Score = 100 bits (110), Expect = 5e-19 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 214 TGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCA 273 |||||||||||||| |||||||||| || |||| ||| || ||||||||||| ||||||| Sbjct 2728 TGGTAACTTTTCTGACACCTCTAGCTTCGAATTCCGAAGGTCTAAAGGATCGTTAGGCCA 2669 Query 274 CACTTTCATGGTTTGTATTC 293 | |||||| |||| |||||| Sbjct 2668 CGCTTTCACGGTTCGTATTC 2649 >seq28523 Length=7105 Score = 91.5 bits (100), Expect = 3e-16 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 368 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 426 Query 61 TGACGGTCTAAACCC 75 |||||||||||||| Sbjct 427 CGACGGTCTAAACCC 441 >seq12834 Length=2744 Score = 91.5 bits (100), Expect = 3e-16 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 216 GTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACA 275 |||||||||||| |||||||||| | |||| ||| || ||||||||||| |||||||| Sbjct 2543 GTAACTTTTCTGACACCTCTAGCTTTGAATTCCGAAGGTCTAAAGGATCGTTAGGCCACG 2602 Query 276 CTTTCATGGTTTGTATTC 293 |||||| |||| |||||| Sbjct 2603 CTTTCACGGTTCGTATTC 2620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853738694400