Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq32976 149 1e-33 seq10921 134 3e-29 seq33404 127 4e-27 seq27302 107 4e-21 >seq32976 Length=53184 Score = 149 bits (164), Expect = 1e-33 Identities = 163/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAG 188 |||||| ||||||| |||||||||| |||||||||||| ||||| | |||| | Sbjct 32459 CAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGG 32400 Query 189 CTTGGATGGAAACCATGCGCACA---GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 |||| ||| | || || | ||||||||||| ||||| | |||||| | | ||| Sbjct 32399 GCTGGACGGAGAT--TG-GCCCTTGGGTGCAAAGGCAGAAGGGAGCTTGACTACAAGACC 32343 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 | | ||| |||||||||||||||| | |||| ||||||| | || | || ||||| || Sbjct 32342 CACCCGTCGAGCAGGGACGAAAGTCAGCCTTAGTGATCCGACTGTACCGAGTGGAAGGGT 32283 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||||| ||||||||||| ||| || |||||| Sbjct 32282 CGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 32249 >seq10921 Length=2713 Score = 134 bits (148), Expect = 3e-29 Identities = 146/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 9 GGGACAGTTTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 68 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | | || | ||| ||| | || | | |||||||||||||||||| Sbjct 69 GTGCAAAGGTTTCTTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAAAAGGGA 127 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 128 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 187 Query 290 TGCTGAATGGA 300 ||| || |||| Sbjct 188 TGCCGAGTGGA 198 >seq33404 Length=130495 Score = 127 bits (140), Expect = 4e-27 Identities = 170/233 (73%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTC---GCCTCCCAAAGAGTAACGGA 167 |||| ||| |||| | || ||| |||||||| ||||| ||| |||||||| Sbjct 102550 GGGATAGTTTCAGGTAGACAATTTCTATGGGGCGGCGTAAGCCTCTAAAAAGGTAACGGA 102491 Query 168 GGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAG 226 || | ||||| | ||| | |||| ||| | || | | |||||||||| | ||| Sbjct 102490 GGTGTGCAAAGGTTTTCTCGGGCTGGACGGAGATTG-GCCCTCGAGTGCAAAGGTAGAAG 102432 Query 227 GGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGG 286 || | |||||||| | |||| | ||| || |||||||||| |||| |||| |||| || Sbjct 102431 GGAGCTTGACTGCAAGACCCACCCGTCAAGTAGGGACGAAATTCGGCCTTAGTGATACGA 102372 Query 287 CGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| | ||||| || |||||||| ||||||||||| ||| || |||||| Sbjct 102371 CGGTGCCAAGTGGAAGGGTCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 102319 >seq27302 Length=20257 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 10166 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 10225 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 10226 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 10280 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 10281 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 10340 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 10341 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 10391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981639622400