Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2810 206 6e-51 seq34055 194 4e-47 seq33632 168 1e-39 seq33510 109 1e-21 seq34035 102 2e-19 seq32326 80.6 6e-13 >seq2810 Length=20389 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 19819 CTTTACAAGCGGCACTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 19876 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 19877 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 19936 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 19937 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 19996 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 19997 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 20036 >seq34055 Length=92358 Score = 194 bits (214), Expect = 4e-47 Identities = 144/166 (87%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| ||| | |||||||||||||||| || |||||||||||||||||| Sbjct 8518 CACGCGGCATTG-CTGCAA-AGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 8575 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || | ||||||||| |||||||||| | |||||||| |||||||||||||| |||||| | Sbjct 8576 CCATGGGAGTCTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 8635 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 || |||| |||||||||| ||| ||| |||||||||||||||| || Sbjct 8636 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTATTC 8681 >seq33632 Length=88754 Score = 168 bits (186), Expect = 1e-39 Identities = 121/138 (88%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||| |||||||||||||| || |||||||||| ||||| | Sbjct 21751 CACGCGGCATTG-CTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCAC 21809 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| | Sbjct 21810 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCT 21869 Query 149 ACGGATCGTCGCCTTGGT 166 || |||| |||||||||| Sbjct 21870 ACTGATCATCGCCTTGGT 21887 >seq33510 Length=50102 Score = 109 bits (120), Expect = 1e-21 Identities = 105/135 (78%), Gaps = 11/135 (8%) Strand=Plus/Minus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || ||| || ||| || ||||| |||||||| ||| |||||||||| | ||||||||||| Sbjct 22140 AAAATTTCCAACTACTACCTCCTGTAGGAGTTTGGGCCGTGTCTCAATCCCAGTGTGACT 22081 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACC---TCACCAA 184 |||||| ||||| |||| ||| |||| ||||| || ||| || ||||||| Sbjct 22080 GATCATTCTCTCGGACC--------ATCTTCGCATTGGTAAGATATTCCCTCATCACCAA 22029 Query 185 CTAGCTAATCCGACC 199 |||||||||| |||| Sbjct 22028 CTAGCTAATCAGACC 22014 >seq34035 Length=91046 Score = 102 bits (112), Expect = 2e-19 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| Sbjct 50484 TCAGGCTTTCGCCCATTGCGGAAAATTCTCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 50543 Query 107 TGTCTCAGT 115 ||||||||| Sbjct 50544 TGTCTCAGT 50552 >seq32326 Length=27666 Score = 80.6 bits (88), Expect = 6e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 |||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 6808 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 6755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071170272000