Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq27302 141 3e-31 seq34047 107 7e-21 seq34431 100 1e-18 seq33959 87.8 7e-15 seq33487 84.2 8e-14 seq30046 82.4 3e-13 >seq27302 Length=20257 Score = 141 bits (156), Expect = 3e-31 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 8221 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 8162 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 8161 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 8102 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 8101 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 8042 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 ||||||||||| ||||| |||||| | | |||||||| Sbjct 8041 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 8002 Score = 109 bits (120), Expect = 2e-21 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||| |||| | Sbjct 903 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 844 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 843 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 784 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 783 GAGGGTGGTCCC 772 >seq34047 Length=89382 Score = 107 bits (118), Expect = 7e-21 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 488 ACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547 ||||||||| ||||| ||||||||| ||||||||||||||| | |||||| ||||||| Sbjct 27646 ACTCCCCGCTGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATAGGTCACC 27587 Query 548 AAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 27586 CAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 27535 >seq34431 Length=213361 Score = 100 bits (110), Expect = 1e-18 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| || |||||||||||||||| ||||| ||||||||| ||||||||||||||| Sbjct 170065 GGTTTCATGTTCTATTTCACTCCCCGCTGGGGGTTCTTTTCACCCTTCCCTCACGGTACT 170124 Query 530 TGTCCGCTATCGGTCACC 547 | |||||||||||||| Sbjct 170125 ACTTCGCTATCGGTCACC 170142 >seq33959 Length=71220 Score = 87.8 bits (96), Expect = 7e-15 Identities = 139/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 93 CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCA 152 |||||| |||| ||||||||||||| || | ||| ||||| || |||| | Sbjct 35859 CCCTAGCCCATTGAGTGCTCTACCTCGGGCCATTGACATCATACGCTTTACAGAAATAGA 35800 Query 153 TTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCA 212 ||| | | | ||| | |||| | | ||| ||||||||||||| ||| ||||| |||| Sbjct 35799 TTTTGCGTAAAACTAACTATACCCGATCTTGGTTGGCCTTTCACCTCTAGCCACAAGTCA 35740 Query 213 TCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGCGCTTCA 271 ||| | | ||| | || || ||||||||| |||||| | | ||| | | ||||| Sbjct 35739 TCCTCGTATTTTGCCACATACGTGGGTTCGACCCTCCAAGGTCTGTTAGAGCTCTCTTCA 35680 Query 272 ACCTGCCCATGGATAGAT 289 ||||| |||| ||||| Sbjct 35679 ACCTGTTGATGGCTAGAT 35662 >seq33487 Length=127790 Score = 84.2 bits (92), Expect = 8e-14 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 183 GATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCG 242 || |||| ||||||||||| ||||| |||||| || | | |||||| | ||| |||||| Sbjct 55317 GAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCG 55258 Query 243 GTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGG 302 | | ||||| || | |||| | |||| ||| |||||||||||||| | ||||| Sbjct 55257 GACTTCCACTTAGTTTCACCCAAGTTTCACCCTAGTCATGGATAGATCACCCTGGTTCGG 55198 Query 303 G 303 | Sbjct 55197 G 55197 >seq30046 Length=11355 Score = 82.4 bits (90), Expect = 3e-13 Identities = 96/129 (74%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 451 CGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTACTTT 508 |||| |||| | ||| | | | | |||| || ||| ||||||| |||| |||| Sbjct 5638 CGACTGATTATTCGCATAAGATCTTAGGTTCTCTATTGCACTCCCTAAATAGGGTTCTTT 5697 Query 509 TCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACG 568 |||| ||||||||||| ||||||| |||||||| ||| || | || ||||||||| | Sbjct 5698 TCACGTTTCCCTCACGATACTTGTACGCTATCGTTCATTGAGAAATACTTAGGCTTAGAG 5757 Query 569 GGTGGTCCC 577 |||||| || Sbjct 5758 GGTGGTACC 5766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816193177600