Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq27302 102 2e-19 seq34431 96.9 9e-18 seq34047 96.9 9e-18 seq30046 78.8 2e-12 >seq27302 Length=20257 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 898 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 840 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 839 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 780 Query 373 ATGGTccccc 382 ||||||||| Sbjct 779 GTGGTCCCCC 770 >seq34431 Length=213361 Score = 96.9 bits (106), Expect = 9e-18 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 271 CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330 |||||||| | ||||||||||||||| || |||||||||||| || ||||||||||||| Sbjct 170064 CGGTTTCATGTTCTATTTCACTCCCCGCTG-GGGGTTCTTTTCACCCTTCCCTCACGGTA 170122 Query 331 CTAGTTCACTATCGGTCA 348 ||| ||| |||||||||| Sbjct 170123 CTACTTCGCTATCGGTCA 170140 >seq34047 Length=89382 Score = 96.9 bits (106), Expect = 9e-18 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 290 ACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAG 349 ||||||| || |||||||||||| || |||||||||||||||| ||| |||| ||||| Sbjct 27646 ACTCCCCGCTG-GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATAGGTCAC 27588 Query 350 TCAGTAGTATTTAGCCTTGGAGGATGGTcc 379 ||| |||||||||||||| | | |||||| Sbjct 27587 CCAGGAGTATTTAGCCTTGCAAGGTGGTCC 27558 >seq30046 Length=11355 Score = 78.8 bits (86), Expect = 2e-12 Identities = 96/129 (74%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| || | |||||| | | | ||| ||| ||| ||||||| | |||||||||| Sbjct 5640 ACTGATTATTCGCATAAGATCTTAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 5698 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | | ||||||||||| |||| || | |||||| ||| | || | || |||| ||| |||| Sbjct 5699 CACGTTTCCCTCACGATACTTGTACGCTATCGTTCATTGAGAAATACTTAGGCTTAGAGG 5758 Query 373 ATGGTcccc 381 |||| ||| Sbjct 5759 GTGGTACCC 5767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240639001600