Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq34055 154 3e-35 seq33632 140 6e-31 seq2810 136 8e-30 seq34035 100 6e-19 seq33510 80.6 5e-13 >seq34055 Length=92358 Score = 154 bits (170), Expect = 3e-35 Identities = 131/160 (82%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||||| ||| |||| ||||||| | || || ||||||||||||||||| | | Sbjct 8523 GGCATTGCTGCAA-AGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCATGG 8581 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||| ||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 8582 GAGTCTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 8641 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 | ||| |||||| |||||| ||||||||||| ||| || Sbjct 8642 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTATTC 8681 >seq33632 Length=88754 Score = 140 bits (154), Expect = 6e-31 Identities = 110/132 (83%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||| | |||| ||||||| | || || ||||||| ||||| ||||||| Sbjct 21756 GGCATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCACCCGTAG 21815 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 21816 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 21875 Query 121 CGTCGGCTTGGT 132 | ||| |||||| Sbjct 21876 CATCGCCTTGGT 21887 >seq2810 Length=20389 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 19859 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 19918 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 19919 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 19978 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 19979 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 20011 >seq34035 Length=91046 Score = 100 bits (110), Expect = 6e-19 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 || |||||| | ||||| |||| ||||||| | || || | ||||||||||||||||||| Sbjct 50472 GGTGTCGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCTCCACTGCTGCCTCCCGTAG 50531 Query 61 GAGTCTGGGCCGTGTCTCAGTCC 83 |||||||| |||||||||||||| Sbjct 50532 GAGTCTGGACCGTGTCTCAGTCC 50554 >seq33510 Length=50102 Score = 80.6 bits (88), Expect = 5e-13 Identities = 107/149 (72%), Gaps = 11/149 (7%) Strand=Plus/Minus Query 27 ATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAA 86 |||| | || || || ||| || ||||| |||||||| |||||||||||||| ||||| Sbjct 22147 ATTGCGAAAAATTTCCAACTACTACCTCCTGTAGGAGTTTGGGCCGTGTCTCAATCCCAG 22088 Query 87 TGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATC--- 143 |||| | | ||| ||||| | || ||| ||| ||||| | |||| | Sbjct 22087 TGTGACTGATCATTCTCTCGGACC--------ATCTTCGCATTGGTAAGATATTCCCTCA 22036 Query 144 TCACCAACTACCTAATCGGCCGCGAGCCC 172 |||||||||| |||||| | | ||||||| Sbjct 22035 TCACCAACTAGCTAATCAGACCCGAGCCC 22007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997627238400